BAC Information

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BAC

Clone NameMSMg01-344I04
ChromosomeX (Build37)
Map Location 152,300,919 - 152,301,401
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040937, Magea6, Magea3, LOC626034, Magea8, Magea2, Magea5, Magea1, 1700042B14Rik, LOC245676, Amd-ps1, LOC667369, Sat1, Acot9, LOC667383, Prdx4, LOC667394, Ptchd1
Downstream gene4930503H13Rik, LOC640803
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-344I04.T7 (MSMg01no344_i04.b1)MSMg01-344I04.TJ (MSMg01no344_i04.g1)
ACCAG457559AG457560
length731727
length of high quality
(start - end)
487 (49 - 535)502 (78 - 579)
definitionCHROMAT_FILE: MSMg01no344_i04.b1 PHD_FILE: MSMg01no344_i04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:34:43 2005CHROMAT_FILE: MSMg01no344_i04.g1 PHD_FILE: MSMg01no344_i04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:34:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCTGATTATGTCTTCTTACTGATGCTAAGTTGTTGAATGGATT
TCAACATCTATATTTGAATAATTAGTAACCTGAGTTACAGAATACACTTA
ACATGGTGGAAATTTTACTCTAAGTTTCTAGGTTCTTACTTTGCCTTTGG
AGATTATTATTAAATCAGATGTGCAAGGTTGAGTCATGCATTCTATTCCT
TTGACATGCCATTCAGCAATTCAATGTCTGTGCATATTTTTGTTTTTACT
GTAATTTACTTCTCTCTTTAGTCTGTATTACAGTACTCTCCCATGTTCAT
AGGAAAATATTTATTGGTTGAGGCCTTTTTAAAATTTTGCCTGTGTTCTT
GAATATATGTATTGTTTGTGTATATAAATTTTAATAAACAGAAATAGTAA
TTTCACACTCACACACACATATACACTTTTAGATGTGATGACTTTGATAC
TCATGCAGTTGTGTATGCACATATCTGTTTGCTTACAACTGTTGCTTAGT
AATATATTATATTTTGCCTGTACCATCTCACTTATTGATTCCTGGTAACT
TCCTTGCTATCTTCTAAATATTCTGCATAATACATTTCTAATTTGTATTT
TTAAACTCCGATGAATGATACTATTTTTTTTGTTTTGTTTTGCACCCACC
CCGCTTTGGAAATATTCCATATTTTCGAGCT
CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACAGAATGGC
AGAGAAACACCTGAAAAAATTTTCAACATCCTTAATCATCAGGGAAATGC
AAATCAAAACAACCCTGAGATTCCACCTCACACCTGTCAGAATGGCTAAA
TTCAAAAATTCAGGTGACTGAAGAAGCTAGTGAGGATGTCGAGAAAGAGG
AACACTCCTCCATTGTTGGTGGGATTGCAGACTTGTACAACCACTCTGGA
AATCAGTCTGGTGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGAT
CCAGCAATACCTCTTCTGGGCATATATCCAGATGTTCCAACCGGTAAGAA
GGACACATGCTCCACTATGTTCATAGCAGCCTTTTTTATAATAGCCAGAA
GCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAAAAAATG
TGGTACATTTACACAATGGATTACTATTCAGCTATTAAAAAGAATGAATT
TATGAAATTCCTAAGCAAATGGATGGACCTAGAGGGCATCATCCTGAGTG
AGGTAACCCAGTCACAAAGGAACTCACACAATAAGTACTCTCTGATGAGT
GGATATTACCCTACATACTTACTATACCCAGGATATTAGATACCATTTGT
TTAATCCCTGAAACTTCACGAAGAATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no344_i04.b1 MSMg01no344_i04.b1 CHROMAT_FILE:
MSMg01no344_i04.b1 PHD_FILE: MSMg01no344_i04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:34:43 2005
         (487 letters)



>mm_chrX_152300715_152301601
          Length = 887

 Score =  919 bits (475), Expect = 0.0
 Identities = 481/483 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctgattatgtcttcttactgatgctaagttgttgaatggatttcaacatctata 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctgattatgtattcttactgatgctaagttgttgaatggatttcaacatctata 264

                                                                       
Query: 65  tttgaataattagtaacctgagttacagaatacacttaacatggtggaaattttactcta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tttgaataattagtaacctgagttacagaatacacttaacatggtggaaattttactcta 324

                                                                       
Query: 125 agtttctaggttcttactttgcctttggagattattattaaatcagatgtgcaaggttga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agtttctaggttcttactttgcctttggagattattattaaatcagatgtgcaaggttga 384

                                                                       
Query: 185 gtcatgcattctattcctttgacatgccattcagcaattcaatgtctgtgcatatttttg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtcatgcattctattcctttgacatgccattcagcaattcaatgtctgtgcatatttttg 444

                                                                       
Query: 245 tttttactgtaatttacttctctctttagtctgtattacagtactctcccatgttcatag 304
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 445 tttttactgtaatttacttctctctttagtctgcattacagtactctcccatgttcatag 504

                                                                       
Query: 305 gaaaatatttattggttgaggcctttttaaaattttgcctgtgttcttgaatatatgtat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gaaaatatttattggttgaggcctttttaaaattttgcctgtgttcttgaatatatgtat 564

                                                                       
Query: 365 tgtttgtgtatataaattttaataaacagaaatagtaatttcacactcacacacacatat 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tgtttgtgtatataaattttaataaacagaaatagtaatttcacactcacacacacatat 624

                                                                       
Query: 425 acacttttagatgtgatgactttgatactcatgcagttgtgtatgcacatatctgtttgc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 acacttttagatgtgatgactttgatactcatgcagttgtgtatgcacatatctgtttgc 684

              
Query: 485 tta 487
           |||
Sbjct: 685 tta 687


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 887
Length adjustment: 10
Effective length of query: 477
Effective length of database: 877
Effective search space:   418329
Effective search space used:   418329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)