NNNNNNNTTTTAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCTCAGTTCCTTCTCCAGCAACATGTCTACCTTCATGC
TGCCATGCCTCCCTCCATGACAATAAAGGACTAAACTTTTAAAACTGTAA
GCAAGCCCCAATTAAAAGTTTTCCTATAAGAGTTGCCTTGGTCATGGTGT
CTGTTTACAGCAATAGAACGCAAAGACAAAGCTGTACTAATGAATCTAAT
GTAATATGTGTAAGTATATGATAATGTAATAAGTATTTGATATGTGTAGG
TAAGTGTATGATACACTTGAAGAAATTTTCTTTATGAATTCTGTTACTAT
GTGCAATCAATATACATCTATAAAAAGTGGACATAGAAATTCAAAATATT
TAGTAACATTCAAGGTTAACATAAAGCATAAAACTGATGTTATATACTTC
CCTGCCTGGAGCTTAATGTATTCAGAAAACACACAGCCCATGCTGTGTTT
TATAAGGCTTCCCTCTCACACTTCTATTCCTTGCCTATATATATTCTTCT
CCCTTTCTATCTCATTCTTTTTCCTTCCTTTCTGTGACTTGTCAAATTCA
CATTTAATTATCACTTTCCTGAGGAAGTCTTTTTTGATTCTCCACTCAAG
TATGGGGCCAAATGGACCGTCCTAAAGNCCATCAAATTCTTAAAAAGAAC
TGCTCAGCTGCCTACCCCTTATCAATGACATTCTAAAGGGGGAGCCCTGT
TTGGTCCCTA

NNNNNNTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAACTTAGGTTATCAGG
CAGGTATGGCAAATTCTTTACCTACTTATCCACTTTGCTAGTCTGAGATC
TGAGTTTTGATCCCAATTCTAACCTTAACTCTGGTTATTAGCTGTGTCTT
TCTGGCAAATAATTTAAGCTGCCAGCTACTTTCTTTCTTCATTAATAATA
TGAGAGTAATAATAGTTCTTACACATGATATTGAAGTGAGGATTAAACCA
ACTAATACGTATGAGGTACTGAGAGCCTGACATAGTTTCAGTGTTTAGTA
GAGGTCCTTGTTTTATTTTTGTAAGTTAATACAATGTCTGTATTATGTAC
TATGCTAATCAGTTCCACACATGGGACTGCATCATTTATACCAGACCATA
ACTCATGAGAAATAGATGACCATCATCCCCATTTTACATATAAAGAATAT
ATAACCGAGGTCCCGGTGATGTTGTAGAGTACTTGTCTAACGTACATGGC
CCTAAAAGGCAGCGCCTCCAAAGATGCCTTGGCCAAGGTTACAGAACTGG
AATTTGAATACAAGTGTGAACTGGGTTTAGGACAATTCACAAATGATAAT
AGGCCAGGTATTGGGCTCTGTAGATTGTTTCTTCTCTTCCCTATGCTAAA
GTTAAATGGGATTGGATCTGGCCCCAATCCCTCTTGCTGAAATTTCCAAC

Query= MSMg01no345_a20.b1 MSMg01no345_a20.b1 CHROMAT_FILE:
MSMg01no345_a20.b1 PHD_FILE: MSMg01no345_a20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:35:25 2005
         (532 letters)



>mm_chrX_6187049_6187980
          Length = 932

 Score =  998 bits (516), Expect = 0.0
 Identities = 525/528 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctcagttccttctccagcaacatgtctaccttcatgctgccatgcctccctccat 64
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 893 gaattctcagttccttctccagcaacatgtctaccttcatgctgccatgcttccctccat 834

                                                                       
Query: 65  gacaataaaggactaaacttttaaaactgtaagcaagccccaattaaaagttttcctata 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 833 gacaataaaggactaaacttttaaaactgtaagcaagccccaattaaaagttttcctata 774

                                                                       
Query: 125 agagttgccttggtcatggtgtctgtttacagcaatagaacgcaaagacaaagctgtact 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773 agagttgccttggtcatggtgtctgtttacagcaatagaacgcaaagacaaagctgtact 714

                                                                       
Query: 185 aatgaatctaatgtaatatgtgtaagtatatgataatgtaataagtatttgatatgtgta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 aatgaatctaatgtaatatgtgtaagtatatgataatgtaataagtatttgatatgtgta 654

                                                                       
Query: 245 ggtaagtgtatgatacacttgaagaaattttctttatgaattctgttactatgtgcaatc 304
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 ggtaagtgtatgctacacttgaagaaattttctttatgaattctgttactatgtgcaatc 594

                                                                       
Query: 305 aatatacatctataaaaagtggacatagaaattcaaaatatttagtaacattcaaggtta 364
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 aatagacatctataaaaagtggacatagaaattcaaaatatttagtaacattcaaggtta 534

                                                                       
Query: 365 acataaagcataaaactgatgttatatacttccctgcctggagcttaatgtattcagaaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 acataaagcataaaactgatgttatatacttccctgcctggagcttaatgtattcagaaa 474

                                                                       
Query: 425 acacacagcccatgctgtgttttataaggcttccctctcacacttctattccttgcctat 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 acacacagcccatgctgtgttttataaggcttccctctcacacttctattccttgcctat 414

                                                           
Query: 485 atatattcttctccctttctatctcattctttttccttcctttctgtg 532
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 atatattcttctccctttctatctcattctttttccttcctttctgtg 366


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 932
Length adjustment: 10
Effective length of query: 522
Effective length of database: 922
Effective search space:   481284
Effective search space used:   481284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)