BAC Information

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BAC

Clone NameMSMg01-345L21
ChromosomeX (Build37)
Map Location 88,069,522 - 88,069,905
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC633246, Nanog-ps1, 4930415L06Rik, EG547215, Gm370, LOC194615, LOC629471
Downstream geneLOC100041815, Gm44, LOC670074, LOC667972, LOC667976, Mageb2, EG278167, EG667988, EG667993, EG385489, 1700084M14Rik, EG236891, LOC629542, Mageb5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-345L21.T7 (MSMg01no345_l21.b1)MSMg01-345L21.TJ (MSMg01no345_l21.g1)
ACCAG458493AG458494
length773746
length of high quality
(start - end)		511 (55 - 565)607 (82 - 688)
definitionCHROMAT_FILE: MSMg01no345_l21.b1 PHD_FILE: MSMg01no345_l21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:36:15 2005CHROMAT_FILE: MSMg01no345_l21.g1 PHD_FILE: MSMg01no345_l21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:36:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNTTATTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCCTAAGACTATTTATAAGAACTTTCTTTACTGTTTTT
TGGGGGGATGGAGATGGAGGTATATTGCACTAGGGGTAGTCACCAAAGGC
TTCTATGTCCCTCATTTCCAGTTGTGACTCTGCTTGTATTTATCAACACC
ATGGCAAAAGTAATTTTCTTTTACTTTAGAGCAAAACAGAAAACAGATCG
TGGATACATGGTTTCTGGTGACTGCACAGACCATGGATTTAAACACATAA
GAAGGGTCTGTAATAAAAGCCATTTTATTGAAGAAGGAATTATCCAAGTT
TGAAAGTGACATCTAATTGAGGGGCAGACAATATTGTTTTATATAGACCT
ACAACACTATAAGCAAGTGAAATTAATGAAACAGGTATTAAATTGTGTTT
TGGTCATTATTTCATTTAATTTTCTAGGTATCATTACCATGTAATTATTG
CATTAGTTATTAATTTACTTCATATCACTATAAGCCTGTGATTAAGTGTA
TTGTTACATTTCACTTAAAAGGAAGCTAGAAACTGTACTTATCCTCAGAC
AAAGGTGGGTCATGGAGCTTCTGGCATTATGGTTAAATTCAATTTGGCGC
CAAAATCTCCAACCAATTAAAGGGCACTTTTGCTTTATTGAAAAAAAAAC
AATTTTTTCCTGCGAAACCCACCCATTGGGACAATTATTACTAATCCCCT
TCCGAGAAATACCTTTTATCCCG

NNNTTTACGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAA
TGGCAGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAA
ATGCAAATATAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGC
TAAGATAAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAA
GAGGAACACTCCTCCATTGTTGGTGGGATCTTAGGCTTGTACAACTACTC
TGGAAATCAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACTGGA
GGATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTG
GTAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCATAATTATAATA
GACAGAAGCTGGAAAGAACCCAGATGCCCCTAAACAGAGGAATGGATATA
GAAAATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGA
ATGAATTTATGAAATTCCTAGGCAAATGGATGGACCTGGAGGGCATCATC
CTGAGTGAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACT
GATAAGTGGATATTAGCCCCAAACCTAGGATACCCAAGATATAAGATACA
ATTTGCTAAACACATGAAACTCAAGAAAAATGAAGACTGAAGTGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no345_l21.b1 MSMg01no345_l21.b1 CHROMAT_FILE:
MSMg01no345_l21.b1 PHD_FILE: MSMg01no345_l21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:15 2005
         (511 letters)



>mm_chrX_88068995_88069905
          Length = 911

 Score =  696 bits (360), Expect = 0.0
 Identities = 378/384 (98%)
 Strand = Plus / Minus

                                                                       
Query: 127 tgcttgtatttatcaacaccatggcaaaagtaattttcttttactttagagcaaaacaga 186
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 911 tgcttgtattcatcaacaccatggcaaaagtaattttcttttactttagagcaaaacaga 852

                                                                       
Query: 187 aaacagatcgtggatacatggtttctggtgactgcacagaccatggatttaaacacataa 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 851 aaacagatcgtggatacatggtttctggtgactgcacagaccatggatttaaacacataa 792

                                                                       
Query: 247 gaagggtctgtaataaaagccattttattgaagaaggaattatccaagtttgaaagtgac 306
           |||||||||||||||||||||||||||||||||||||||  | |||||||||||||||||
Sbjct: 791 gaagggtctgtaataaaagccattttattgaagaaggaagcagccaagtttgaaagtgac 732

                                                                       
Query: 307 atctaattgaggggcagacaatattgttttatatagacctacaacactataagcaagtga 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 atctaattgaggggcagacaatattgttttatatagacctacaacactataagcaagtga 672

                                                                       
Query: 367 aattaatgaaacaggtattaaattgtgttttggtcattatttcatttaattttctaggta 426
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 671 aattaatgaaacaggtattaaattgtgttttggtcattatttaatttaattttctaggta 612

                                                                       
Query: 427 tcattaccatgtaattattgcattagttattaatttacttcatatcactataagcctgtg 486
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 tcattaccatgtaattattgcattagttattaatttacttcatatcactataagcctgtg 552

                                   
Query: 487 attaagtgtattgttacatttcac 510
           |||||||||||||| |||||||||
Sbjct: 551 attaagtgtattgtcacatttcac 528


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 511
Length of database: 911
Length adjustment: 10
Effective length of query: 501
Effective length of database: 901
Effective search space:   451401
Effective search space used:   451401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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