XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCATTTAT
TCCTAAAGTTCCTATGTGGTTTTATACATAAAGTTCATATGTGTTAATCA
CATTTAGATAGCCTGGTATGATGGTTCACACCAGTAATATGAACATTTGG
GATTCTGAGGTTGAAGAATTCCACAAGCTGGAGACCACCCTAAGCTACAC
AGTTAGACTCTGTCTCAAAAACAACACAAAATTAAGATAACAAGCTTTAA
TAAGCAAAAAATAAAAGTACAGACTTTTTGTTTCAGAAGGCTTTAATTAC
ACAGGGAAAATGCTTATCCATGGGAAAGTCAGGACACAAAAATCACACGT
AAGAATGTCCCCATTTTTCATGGGAAACATCTACAAAATTACAATAATAA
AAATTCGAATTCTGACCAAAACAATGCCAGAACAATGACCCAATTTTTCA
TAAGGAAAAACTTTACATAGCATATGCATGGGAAGAGATGAGGGAGCTAA
AGAAATAAATTGAAAGACATTGCCAGTTCTTTTGTTGTTGTTATTATTTG
TTTGTTTGTTTGTCTCATATAGGAGACTTTTCTTTGATAATGGTTGGTTC
TGAAATTTATGGAAAGTAGAACTTTTAAAAGGGGCATCATTCTTTCGGAA
AACCACAAAGCATAGCTTTTTGCAGCTCACCCTGCCGGCCTTTTTGGACT
GAATTTCCTAAAAAGTGACTGGAGCTGGTAAATTAAACTT

TTGTTTTACTTTTTTNTTTTTGTTTTTCCACACATANNNNATTATTTTNT
NTTTTCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAA
TGGCAGAGAAGCACCTGAAAAAAATGTTCAACATCTTTAATCATCAGGGA
AATGCAAATCAAAACAACACTGAGATTCCACTTCACTCCAGTCAGAATGG
CTAAGATCAAAAGCTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAA
AGGGGAACACTCCTCCATTGTTGGTGGAATTGCAAGCTTGTACAACCACT
CTGGAAATCAGTCTGGTGGTTCCTCAGAATATTGGACATAGTACTACCGG
AGGATCCCGCAATACCTCTCCTGGGCATATACCCAGAAGATGTCCCAACC
AGTAAGAAGAACACATGCTCCACTATGTTCATAGCAGCCTTGTTTATAAT
AGCCAGAAGTTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATAC
AGAAAATGTGCTACATTTACACAATGGAATACTACTCAGGTATTAAAAAT
AATGAATTTATGAAATTCCTAGGCAAATGAATGGACCTGTGATGTTATCA
TCCCTGATTGAAGTAACCCAACTCACCATTGTAACTCTTAACAATTTTAT
CCTCACTTGATTAATTGGATTAATAACCCCTATATATCTTTAGAAAACCC
CTAATATCTAAAAGAAAATATCTTTGCGTTTATTCTCCCTGGCAAATTTT
CACTCAAGATTTCGCACATATCTCN

Query= MSMg01no345_m09.b1 MSMg01no345_m09.b1 CHROMAT_FILE:
MSMg01no345_m09.b1 PHD_FILE: MSMg01no345_m09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:18 2005
         (517 letters)



>mm_chrX_16989344_16990260
          Length = 917

 Score =  969 bits (501), Expect = 0.0
 Identities = 510/513 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccatttattcctaaagttcctatgtggttttatacataaagttcatatgtgttaa 64
           ||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccatttatacataaagttcgtatgtggttttatacataaagttcatatgtgttaa 264

                                                                       
Query: 65  tcacatttagatagcctggtatgatggttcacaccagtaatatgaacatttgggattctg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tcacatttagatagcctggtatgatggttcacaccagtaatatgaacatttgggattctg 324

                                                                       
Query: 125 aggttgaagaattccacaagctggagaccaccctaagctacacagttagactctgtctca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aggttgaagaattccacaagctggagaccaccctaagctacacagttagactctgtctca 384

                                                                       
Query: 185 aaaacaacacaaaattaagataacaagctttaataagcaaaaaataaaagtacagacttt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aaaacaacacaaaattaagataacaagctttaataagcaaaaaataaaagtacagacttt 444

                                                                       
Query: 245 ttgtttcagaaggctttaattacacagggaaaatgcttatccatgggaaagtcaggacac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttgtttcagaaggctttaattacacagggaaaatgcttatccatgggaaagtcaggacac 504

                                                                       
Query: 305 aaaaatcacacgtaagaatgtccccatttttcatgggaaacatctacaaaattacaataa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aaaaatcacacgtaagaatgtccccatttttcatgggaaacatctacaaaattacaataa 564

                                                                       
Query: 365 taaaaattcgaattctgaccaaaacaatgccagaacaatgacccaatttttcataaggaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 taaaaattcgaattctgaccaaaacaatgccagaacaatgacccaatttttcataaggaa 624

                                                                       
Query: 425 aaactttacatagcatatgcatgggaagagatgagggagctaaagaaataaattgaaaga 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aaactttacatagcatatgcatgggaagagatgagggagctaaagaaataaattgaaaga 684

                                            
Query: 485 cattgccagttcttttgttgttgttattatttg 517
           |||||||||||||||||||||||||||||||||
Sbjct: 685 cattgccagttcttttgttgttgttattatttg 717


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 917
Length adjustment: 10
Effective length of query: 507
Effective length of database: 907
Effective search space:   459849
Effective search space used:   459849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)