BAC Information

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BAC

Clone NameMSMg01-346N20
ChromosomeX (Build37)
Map Location 158,194,040 - 158,194,524
singlet/doubletsinglet
Overlap geneRai2
Upstream geneRs1, Gja6, Scml2, LOC414364, Prkaca-ps1
Downstream geneGm47, Nhs, Reps2, LOC654358, LOC100041557, LOC667630
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-346N20.T7 (MSMg01no346_n20.b1)MSMg01-346N20.TJ (MSMg01no346_n20.g1)
ACCAG459349AG459350
length777850
length of high quality
(start - end)		492 (32 - 523)---
definitionCHROMAT_FILE: MSMg01no346_n20.b1 PHD_FILE: MSMg01no346_n20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:37:39 2005CHROMAT_FILE: MSMg01no346_n20.g1 PHD_FILE: MSMg01no346_n20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:37:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCACAAAATG
CCTCCAAGCAACCTTTAGGTAATGAGGTGACAAATAGTATATTGAAATTG
TGTTCTTCCAAGCAGAAGTGCTTTACCATGAAAAAGATTACTTGAAGGCT
AATTAGGATTTTGACATTCTTTAATGACTAACTCCTTAGGGCTATGTCAA
AAGTCATGTGAATATGTCTAACTTATTGTCTTATCATAGGTGATATTTAT
TCCATGGGGAGGGGGGGAACAAAGACATGTTAGTGACATTCTTTGAAATT
TGAGTTAAGTACTAGGACCACAAAGGCAGAAGCAGAAATCTGTCTTAATA
AGCTGAAAATAGTTGAGAAATATACAAATAGAATAATGAGTTTGCACGTA
TTTTACTAACACCCCTTCAGTTGAGAAGTTGAAAAGAAGAATCCTTATTT
CTACTGATGTGGATGGGACTATCAAAGGCACGGGTGTAAAGGTTCACCTT
TGCCCTCTCTTTTGAAACTCTGAGCTGGGTGTGAGATAAAAACAGAGGAG
AGAAGCGTGACTAAAGACATTTGGGTAAATGTGACCTGCCTTCCCTCATG
AACCTTCACGCTAAATGCATTTCTCCAAACCATTTTTCTTCCTGGACTGG
CTCATTTCCTTTCCCTCCCAAAAGGCAGTCCCACCCCCCTCCCCTTGGCC
GATTTGTTCTTAGGTTCCCGATCCCCTGTTTTGTTCTTCTACCGCATTTC
CCACCCTTTGTCCCTTATTCCACATCC

NXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAGCACCTGANNAAAT
GTTCAACATCCCTTATCATCAGGGAAATGGCAATCAAANCAACCCTGAGA
TTCCACCTCCACACAGTCAGAAATGGTAGNNNCAANATCCGTAGTNNCGG
GCGGTGCTGGATACATCGCTACACGAGGCGAGCTCCGTCACGGTCGCGTC
CGACACGCNGCGTCCCGNTNNNAAANCCCCCTGTGTTTAACCCCGTGGAA
ATTCCTCTCTTTTCTTTTTTATAATGGGCTCCCCCCCCCGAAAAAAGTTC
CCTCCCCCCTCTTTAAATTTTTATTTTTNAGTGGTTNTTGGTGTTTTTTT
CCCTTTTTTTTGTCCCTCTCTTACATTTTTTTTTNTATATAAATTCCTTT
TCCTCTTTTTCCCCCTTTTNNNNNNTTTTTTCTTCCTTTTTCNCTTTCTT
TTTTCTTTTTNCTTNCTTTTNTTCCCTTCCTTTTCCCCTTTTTTTTTTTC
TTCCTTTTTTTCTCCTTTCTTTTCTCCCTCCCCCNTTTTCCTTTCCTTCC
TTCCTTTTCTTTCTTNTTTTTCTTTNNTNTTTTCCCCTTCTTCCCTTTTT
CCCCTTTTCCTCCCTTTTTTTTTCCCTCTTTTTTTTTTTTCTNCCTTTTC
CTTCCTCTTTCTTTTTTNTNNTCTTCTTTTTTTCCTCCTTTTCCTTTTCC
TTTCCTTTTCCCCCTTCCTTTTTCTCTTCCTCTCCTTTTTCTCCCCCTTC
TTTTTTTTTNTNTTCTTTCTACCCTTTTCTCTTTTCTCCCCCCTCCGCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no346_n20.b1 MSMg01no346_n20.b1 CHROMAT_FILE:
MSMg01no346_n20.b1 PHD_FILE: MSMg01no346_n20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:37:39 2005
         (492 letters)



>mm_chrX_158193836_158194724
          Length = 889

 Score =  920 bits (476), Expect = 0.0
 Identities = 484/488 (99%), Gaps = 3/488 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccacaaaatgcctccaagcaacctttaggtaatgaggtgacaaatagtatattga 64
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 689 gaattccacaaaatgcctccaagcagcctttaggtaatgaggtgacaaatagtatattga 630

                                                                       
Query: 65  aattgtgttcttccaagcagaagtgctttaccatgaaaaagattacttgaaggctaatta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 aattgtgttcttccaagcagaagtgctttaccatgaaaaagattacttgaaggctaatta 570

                                                                       
Query: 125 ggattttgacattctttaatgactaactccttagggctatgtcaaaagtcatgtgaatat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 ggattttgacattctttaatgactaactccttagggctatgtcaaaagtcatgtgaatat 510

                                                                       
Query: 185 gtctaacttattgtcttatcataggtgatatttattccatggggagggggggaacaaaga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 gtctaacttattgtcttatcataggtgatatttattccatggggagggggggaacaaaga 450

                                                                       
Query: 245 catgttagtgacattctttgaaatttgagttaagtactaggaccacaaaggcagaagcag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 catgttagtgacattctttgaaatttgagttaagtactaggaccacaaaggcagaagcag 390

                                                                       
Query: 305 aaatctgtcttaataagctgaaaatagttgagaaatatacaaatagaataatgagtttgc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 aaatctgtcttaataagctgaaaatagttgagaaatatacaaatagaataatgagtttgc 330

                                                                       
Query: 365 acgtattttactaacaccccttcagttgagaagttgaaaagaagaatccttatttctact 424
           ||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||
Sbjct: 329 acgtattttactaacaccccttcagttgagaagttgaa---aagaatccttatttctact 273

                                                                       
Query: 425 gatgtggatgggactatcaaaggcacgggtgtaaaggttcacctttgccctctcttttga 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 gatgtggatgggactatcaaaggcacgggtgtaaaggttcacctttgccctctcttttga 213

                   
Query: 485 aactctga 492
           ||||||||
Sbjct: 212 aactctga 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 889
Length adjustment: 10
Effective length of query: 482
Effective length of database: 879
Effective search space:   423678
Effective search space used:   423678
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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