Query= MSMg01no347_h13.b1 MSMg01no347_h13.b1 CHROMAT_FILE:
MSMg01no347_h13.b1 PHD_FILE: MSMg01no347_h13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:38:27 2005
(497 letters)
>mm_chrX_10956430_10957326
Length = 897
Score = 884 bits (457), Expect = 0.0
Identities = 483/497 (97%), Gaps = 9/497 (1%)
Strand = Plus / Minus
Query: 1 tgagttggtacgaggtgcagaattgatggtacagaaagacattacacggcctacaactct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 tgagttggtacgaggtgcagaattgatggtacagaaagacattacacggcctacaactct 533
Query: 61 ttggaccatatcaacagatcatccgtggcctcaactgcagaaacatctcattaaattctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 ttggaccatatcaacagatcatccgtggcctcaactgcagaaacatctcattaaattctt 473
Query: 121 gcagtttctccccaaagagcaggcatgcccttccatcttctcaaaacagatggagacctg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 gcagtttctccccaaagagcaggcatgcccttccatcttctcaaaacagatggagacctg 413
Query: 181 gcagaatgttcacctcagctgggactatggattcacctgagatcaactccagagacagca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 gcagaatgttcacctcagctgggactatggattcacctgagatcaactccagagacagca 353
Query: 241 ggttaatcttcattcttgaaatgagtcttgagcaccctagggcatggagggtctggagca 300
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 ggttaatcttcattcaagaaatgagtcttgagcaccctagggcatggagggtctggagca 293
Query: 301 cgtcattgtgtatgtctggagcaggtcaagtggggtatgccgagagagccagaggaatca 360
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 292 cgtcactgtgtatgtctggagcaggtcaagtggggtatgccgagagagccggaggaatca 233
Query: 361 catggttcttctcaggctgtgaaggaactgtcagagctatccatctacagaggtgtttta 420
|||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 232 catggttcttctcaggctgtgaaggaactg---------tccatctacagaggtgtttta 182
Query: 421 ttaagctttcctgaagagctgtgtgagtggaaacttctagttctttggaaaggtatgtca 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 181 ttaagctttcctgaagagctgtgtgagtggaaacttctagttctttggaaaggtatgtta 122
Query: 481 aatgatgttttgctggg 497
|||||||||||||||||
Sbjct: 121 aatgatgttttgctggg 105
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 897
Length adjustment: 10
Effective length of query: 487
Effective length of database: 887
Effective search space: 431969
Effective search space used: 431969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no347_h13.g1 MSMg01no347_h13.g1 CHROMAT_FILE:
MSMg01no347_h13.g1 PHD_FILE: MSMg01no347_h13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:38:27 2005
(470 letters)
>mm_chrX_10757893_10758761
Length = 869
Score = 849 bits (439), Expect = 0.0
Identities = 463/471 (98%), Gaps = 3/471 (0%)
Strand = Plus / Plus
Query: 1 tctcccgcctgccctttcactgagtaataataatgacagcattagagagcagacagatgc 60
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 201 tctcccgcctgccctttcactgagtaataataatggcagcattagagagcagacagatgc 260
Query: 61 ggcgcgcactggtgcacagtgcttggtgttgtaggctaatgaatgtatttgccacggctg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggcgcgcactggtgcacagtgcttggtgttgtaggctaatgaatgtatttgccacggctg 320
Query: 121 tttcttaaaaatgataaagttaatttttctgggacctcctttatttctttttaaggctga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttcttaaaaatgataaagttaatttttctgggacctcctttatttctttttaaggctga 380
Query: 181 gcatcacaaaagatggaagctgaaatcatctctcattctttcattcacaatggcttcaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcatcacaaaagatggaagctgaaatcatctctcattctttcattcacaatggcttcaat 440
Query: 241 atgacatttagaaaaacaagcaaaaaaaagtgtgtcattccaggggctcagaactaggca 300
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 441 atgacatttagaaaaacaagcaaaaaaa-gtgtgtcattccaggggctcagaactaggca 499
Query: 301 gagcctgatgtgctcacgaagcgtctgg-ctgtccagggcttgtggttttgtgccttgtg 359
||||||||||||||||| |||| || || |||||||||||||||||||||||||||||||
Sbjct: 500 gagcctgatgtgctcacaaagcatc-ggactgtccagggcttgtggttttgtgccttgtg 558
Query: 360 gttttgctctgggggtagacaaacaggatccttgtggaggtggaatattattatttgttg 419
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 gttttgctctgtgggtagacaaacaggatccttgtggaggtggaatattattatttgttg 618
Query: 420 aaatctcacgtggggaaggtgggagtttgctgttttctggctcaaccacca 470
||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 619 aaatctcacgtggggaaggtgggagtttgctgttttctgcctcaaccacca 669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 470
Length of database: 869
Length adjustment: 10
Effective length of query: 460
Effective length of database: 859
Effective search space: 395140
Effective search space used: 395140
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
