BAC Information

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BAC

Clone NameMSMg01-347I21
ChromosomeX (Build37)
Map Location 134,736,116 - 134,898,260
singlet/doubletdoublet
Overlap geneIl1rapl2, 1700025D03Rik
Upstream geneEG666303
Downstream geneNrk, Serpina7, 4930513O06Rik, 4933428M09Rik, Mum1l1, LOC675062, Trap1a, C330013F16Rik, EG666359
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-347I21.T7 (MSMg01no347_i21.b1)MSMg01-347I21.TJ (MSMg01no347_i21.g1)
ACCAG459868AG459869
length765740
length of high quality
(start - end)		277 (45 - 321)568 (79 - 646)
definitionCHROMAT_FILE: MSMg01no347_i21.b1 PHD_FILE: MSMg01no347_i21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:38:34 2005CHROMAT_FILE: MSMg01no347_i21.g1 PHD_FILE: MSMg01no347_i21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:38:34 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(134,736,116 - 134,736,387)(134,897,693 - 134,898,260)
sequence
NACTTAGTCCTCATGTCACTATACGACTCACTATTTCGAGAGGATCCGCG
GAATTCACTATGTATCCAAGACTATGCTCAAAATAATAGAGGTCCACCTG
CCTCTGCTTCCTAAATATTGGGATTAAAGGCAGGTACCACAATGCCTGGA
TTGTTCTTTATTTTTGATGATTTAACTTCTAGATATCCAATGTATAAGGT
TCAGAATAAATTCCAGAAACATTCATCAGCATATCACATGATGGTGGGAT
AAATATAATTATAGGTTATGGTTTATGTTTGTCTAANAACTCATTGCTTG
ACNTANTACATACATACTCTCTTTTTTTCTTCTCAAAGCTAATATGATTA
ATAATGAATGATAAATACTACNCCATTCATTCCTAACTGTACGTGTTTAT
CTTAATAAAAGTACCCCCCCCCCCAAGATTAGTTTGGCCTTTAATCATCT
ATTACTTCTGAACCATCTCTCCTCAGTATTGTCTTCCGTGTAAAAAAGAA
TTGAACTCGTGCCCATCTAACCATACCTTTTCTAACTCTCTACTTAATTT
TACCTCTGTGTCTTGCTCTCCAACCATCTTCCCCCCTTCCTTTTTTTCCT
TTTTTATTTTCCCCCTTTTTGTACTTTTTATCTTTATCCTTTTTCTCCTC
TTCTTTCTCTATCTTTTTTCCCCTTTCCCTCCTTTCCCCTCCCTTTTCTT
TCCCCCTTCCTCGTCTTTTTTCCTTTTTCCCCCCCCCTTCATCTTCTCCT
CCTTCTTTTTCTCCC

NNNNCCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTACTTTTTGGCTAGTAGACA
TAGTGGCCTTTTGAGCCATTTTCTACTCTTACCTCCTGTGAGTTTTCTTG
ATAAAGAGACTTTCTGTTCATCATTCATTCTCATACCTTGACAATATAAT
ATTTTGTGGTAAACTCTACTTACTTTCCACTCTGCTTGTTCTCTATACTT
TCTTCTCTGTTTTTCTGAATTCATTTAGTAGAAACCACAAGGTCTAAGGA
GTCATGGCATTTCCAAAGTGAGATGATTGCAATATTGTTGGCATGAGATG
TTCAGAATTTTTATTTGATGCTTACATAATGGCAAGTAGTGAAAATATTC
AATATTGAAGGTCAGACAAAACAGGTAAGTAGATATACATATGTTCCGTT
TACCACTTTAAAATGACAAAACACTAATAAATCCAATAAAATTATTAGGT
TATGGTTCTTTGCTTAGTATCATATAATACACACATATTCTCATTCAGAG
AATTGAATAAAAATACAGTGACAAAGTATGATCCATGAATATAGATTTTG
AGTCTTGAATTAATAATTCACAATAATTAGCCTGATGCTTTGATACAGCT
AAGAATGCAAGATTAGGACATTTAATCTCAAAAAGTTAAAGTATATCCCC
CAAGNCACACTTCTAATGTTGTCTGGGACCCTGTACTGAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no347_i21.b1 MSMg01no347_i21.b1 CHROMAT_FILE:
MSMg01no347_i21.b1 PHD_FILE: MSMg01no347_i21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:38:34 2005
         (277 letters)



>mm_chrX_134735911_134736587
          Length = 677

 Score =  493 bits (255), Expect = e-144
 Identities = 267/272 (98%)
 Strand = Plus / Plus

                                                                       
Query: 6   ggaattcactatgtatccaagactatgctcaaaataatagaggtccacctgcctctgctt 65
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 ggaattcactatgtagacaagactatgctcaaaataatagaggtccacctgcctctgctt 265

                                                                       
Query: 66  cctaaatattgggattaaaggcaggtaccacaatgcctggattgttctttatttttgatg 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 cctaaatattgggattaaaggcaggtaccacaatgcctggattgttctttatttttgatg 325

                                                                       
Query: 126 atttaacttctagatatccaatgtataaggttcagaataaattccagaaacattcatcag 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 atttaacttctagatatccaatgtataaggttcagaataaattccagaaacattcatcag 385

                                                                       
Query: 186 catatcacatgatggtgggataaatataattataggttatggtttatgtttgtctaanaa 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 386 catatcacatgatggtgggataaatataattataggttatggtttatgtttgtctaagaa 445

                                           
Query: 246 ctcattgcttgacntantacatacatactctc 277
           ||||||||||||| || |||||||||||||||
Sbjct: 446 ctcattgcttgacatagtacatacatactctc 477


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 277
Length of database: 677
Length adjustment: 9
Effective length of query: 268
Effective length of database: 668
Effective search space:   179024
Effective search space used:   179024
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no347_i21.g1 MSMg01no347_i21.g1 CHROMAT_FILE:
MSMg01no347_i21.g1 PHD_FILE: MSMg01no347_i21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:38:34 2005
         (568 letters)



>mm_chrX_134897493_134898460
          Length = 968

 Score = 1091 bits (564), Expect = 0.0
 Identities = 567/568 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtactttttggctagtagacatagtggccttttgagccattttctactcttacctcctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768 tgtactttttggctagtagacatagtggccttttgagccattttctactcttacctcctg 709

                                                                       
Query: 61  tgagttttcttgataaagagactttctgttcatcattcattctcataccttgacaatata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 tgagttttcttgataaagagactttctgttcatcattcattctcataccttgacaatata 649

                                                                       
Query: 121 atattttgtggtaaactctacttactttccactctgcttgttctctatactttcttctct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 atattttgtggtaaactctacttactttccactctgcttgttctctatactttcttctct 589

                                                                       
Query: 181 gtttttctgaattcatttagtagaaaccacaaggtctaaggagtcatggcatttccaaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 gtttttctgaattcatttagtagaaaccacaaggtctaaggagtcatggcatttccaaag 529

                                                                       
Query: 241 tgagatgattgcaatattgttggcatgagatgttcagaatttttatttgatgcttacata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 tgagatgattgcaatattgttggcatgagatgttcagaatttttatttgatgcttacata 469

                                                                       
Query: 301 atggcaagtagtgaaaatattcaatattgaaggtcagacaaaacaggtaagtagatatac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 atggcaagtagtgaaaatattcaatattgaaggtcagacaaaacaggtaagtagatatac 409

                                                                       
Query: 361 atatgttccgtttaccactttaaaatgacaaaacactaataaatccaataaaattattag 420
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 408 atatgttccgtttaccactttaaaatgacaaaatactaataaatccaataaaattattag 349

                                                                       
Query: 421 gttatggttctttgcttagtatcatataatacacacatattctcattcagagaattgaat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 gttatggttctttgcttagtatcatataatacacacatattctcattcagagaattgaat 289

                                                                       
Query: 481 aaaaatacagtgacaaagtatgatccatgaatatagattttgagtcttgaattaataatt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 aaaaatacagtgacaaagtatgatccatgaatatagattttgagtcttgaattaataatt 229

                                       
Query: 541 cacaataattagcctgatgctttgatac 568
           ||||||||||||||||||||||||||||
Sbjct: 228 cacaataattagcctgatgctttgatac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 968
Length adjustment: 10
Effective length of query: 558
Effective length of database: 958
Effective search space:   534564
Effective search space used:   534564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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