BAC Information

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BAC

Clone NameMSMg01-347N11
ChromosomeX (Build37)
Map Location 49,141,181 - 49,141,474
singlet/doubletsinglet
Overlap geneUsp26
Upstream gene2610018G03Rik, LOC100040422, Rap2c, LOC385355, Mbnl3, LOC665866, LOC385356, Hs6st2
Downstream geneLOC100040479, LOC665888, 1700080O16Rik, LOC100040495, Gpc4, Gpc3, Kis2, LOC100041925, LOC665929
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-347N11.T7 (MSMg01no347_n11.b1)MSMg01-347N11.TJ (MSMg01no347_n11.g1)
ACCAG460084AG460085
length748624
length of high quality
(start - end)
563 (82 - 644)---
definitionCHROMAT_FILE: MSMg01no347_n11.b1 PHD_FILE: MSMg01no347_n11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:38:56 2005CHROMAT_FILE: MSMg01no347_n11.g1 PHD_FILE: MSMg01no347_n11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:38:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTTCATTTCCCGAATTAAAAATTCAAATGGAAAGACTCCAAAG
AAGTTGTAATTAGCAAGGGTGTTATTTTATTGCAAGCAGTATAGCAATCA
GTGTATAATAATATTTAAACTAATTACAGCTTTTAGTCAAAAATCTAAGA
TGGGAAATGATTTTTAAGTAGAAATCTGATAGTCCATTCACAAAGTTAAC
ACTGATTTTACAATTCACTCTCCTTATACTATATAGGCTAAATAACGAGT
TACTAAAGGCCCACAAACTGTTCTATAAATATACTAGAACAAATGCTTAT
TTGTGAGTTAATAAAATAACATGTCGGGCTGGTGAGATGGCTCAGTGGGT
AAGAGCACCCGACTGCTCTTCCAAAGGTCCCGAGTTCAAATCCCAGCAAC
CACATGGTGGCTCACAACCATCCATAACGAGATCTGACTCCCTCTTCTGG
AGTGTCTGAAGACAGCTACAGTGTACTTACATATAATTAATAAATAAATA
AATTTTAAAATAACATGTCCATCCAAACCTTCTTCATGGAATCCTTAAAA
ATAATGTACTTTCCTCTAATAACATCTAATGGTTAAATTTTCTTCCNGNC
NCAGATAATCAGTCCCCAAACTCTACNNCACAATTTGTTGAGAGCCTTGT
TTTGTATCCATGCCTAAAATTAACACTCCAGAGTGTTGATATTAAAAC
NTTTTATTNNNNNNNNNNNNNNNCCCATTCANNNNTANCCTNNCNCCCCT
NCCTCCAACTTTANTNACCTATAAAANTTCCCCNAATTCCTTCTTTATTC
CTCTACATCCTCTNAAATATCCTTTTTAAATCCNNTCCACCCTTTTCANT
TTTTTTAANNTTCCCCTNACCTNNCCAAATTNCCCCTCCCCNTTCCCAAT
AATTNAAATNCCCCCNTTCCCTTTTTNNNAAATTCTACTCNNNTCTTTCC
CCCCCCCCCCCATTTATTTANNNNNNNNNNNNNAATCCNTTCCCTTCTCT
CCCTTCCTAATAATTTCTTNNNNNNNNNNCNCCCCCCTTTTCCCCCCCCC
CCCCCNNNNNNCCCCCCTCCCTCCCCCCCCTTCCCCCCNCCCCCCCCCCN
TTCCCCCCCCCCCCCCCTCCCCTTTCCCCTTTTTTTTTTCCCCCCCCCCC
CCCCCCCCCTCTTTTTTTTTCCTCCCNCCCCCTTCCCTCCCCCCCCCCCC
CCCCCCTTCTCTTTCCCCTTTCTTTTTCTTTCTTTTTCCCTTTTTTTTTC
ACTAACAAAAACTAAAANCTTTTTCACTCTTTCTCTTTTTTTCACTNTCC
TCCTCTCCTCTCATTCTCTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no347_n11.b1 MSMg01no347_n11.b1 CHROMAT_FILE:
MSMg01no347_n11.b1 PHD_FILE: MSMg01no347_n11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:38:56 2005
         (563 letters)



>mm_chrX_49140981_49141943
          Length = 963

 Score =  561 bits (290), Expect = e-164
 Identities = 293/294 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaatggaaagactccaaagaagttgtaattagcaagggtgttattttattgcaagcagta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaatggaaagactccaaagaagttgtaattagcaagggtgttattttattgcaagcagta 260

                                                                       
Query: 61  tagcaatcagtgtataataatatttaaactaattacagcttttagtcaaaaatctaagat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tagcaatcagtgtataataatatttaaactaattacagcttttagtcaaaaatctaagat 320

                                                                       
Query: 121 gggaaatgatttttaagtagaaatctgatagtccattcacaaagttaacactgattttac 180
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 321 gggaaatgatttttaagtagaaatatgatagtccattcacaaagttaacactgattttac 380

                                                                       
Query: 181 aattcactctccttatactatataggctaaataacgagttactaaaggcccacaaactgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aattcactctccttatactatataggctaaataacgagttactaaaggcccacaaactgt 440

                                                                 
Query: 241 tctataaatatactagaacaaatgcttatttgtgagttaataaaataacatgtc 294
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctataaatatactagaacaaatgcttatttgtgagttaataaaataacatgtc 494


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 563
Length of database: 963
Length adjustment: 10
Effective length of query: 553
Effective length of database: 953
Effective search space:   527009
Effective search space used:   527009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)