BAC Information

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BAC

Clone NameMSMg01-349F07
ChromosomeX (Build37)
Map Location 54,606,333 - 54,606,840
singlet/doubletsinglet
Overlap genenone
Upstream geneZfp449, LOC100039317, 6330419J24Rik, 6530403M18Rik, LOC100039346, Ddx26b, Gm648, Tmem32, Slc9a6, LOC100039342, Fhl1, Mtap7d3, Gpr112, Brs3, Htatsf1, Vgll1, Cd40lg, Arhgef6
Downstream geneRbmx, Snord61, Gm364, Gpr101, Aldoa-ps, EG666441, LOC666447, Zic3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-349F07.T7 (MSMg01no349_f07.b1)MSMg01-349F07.TJ (MSMg01no349_f07.g1)
ACCAG461213AG461214
length744783
length of high quality
(start - end)		512 (45 - 556)340 (80 - 419)
definitionCHROMAT_FILE: MSMg01no349_f07.b1 PHD_FILE: MSMg01no349_f07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:40:54 2005CHROMAT_FILE: MSMg01no349_f07.g1 PHD_FILE: MSMg01no349_f07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:40:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCCAGCCTCTAGGGCTGTGAGAAATTTCTGTTGTTTATGAGCCATCA
AAGGTATGTACGTAAGTGAACCCAAGAAGAGTATGAAGATTCTTGGGCAG
GGCCAACGACCCAGTTGAAGCTAGGCTAGTTGAGGTCAGCCAAGCTTGCA
TTCTTAAAAGAGAGAAAAAATAAAATTTGATAGTTCATTTTCAAAATTGC
CTCCAGCCAGTTTAGCTCCAAATACAGACACACAAAAAGCACTAGACTCC
CGATGATGCTTTCTCATTTAGCTAGCCCCACCTTCAAGACTATGTTAAGC
CAATTTCCCACCCAAACTAGAAATTTGGAGTAGAAAATTGCTAACAGCTA
AGGAAGTCTGCAACCCCGGGAGCCTGAAAGTTTTAACATAAAAACAATGT
AAAATGCAGAGATGTATCCATGCACTCAGAGATGAACCATGCATGGTTTT
ATTGAGAAACAGATAGATGTAAGCAACAGAGAGAAAGGTAATACCTAACC
TAGATGCTGTGTAAGGTTTTACCCTCCTGGTTATTTAGTAAGAGGAAAGG
GAAGAATAGTCAAGCTGTAAGGTTGACAAACTGTTCTCTGCACTCATTAC
AGTACCTGCCTGTCATTCTAGGCTGATGCCTGGTTTGTAAAGCCGTAAAA
AAAAATACTCTCACTTTTGCTACTTTGAGCCTCCCCCACCCGTA

NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXATAGCCTTCTTTTCTTGGTGT
CACCTATCCCCTCTGGTTCTTACACTCATTCTGTCCCCTCTTCCACAAGG
TTTACTGAGGCTTAAGGGAAGGGATTTGATGGAAACATCCCCTTTATAGG
TGAGTGTTCCAAGGTCTTTAACTCTCTGCATAATGTCTGGATGTGGGTTT
CTGGATTTGCCCCCATCCACAGCAGGAAAAAGAAATCTCTGATGGTGGCT
GAGCAGAGGAATGATCTATGAGAATGACAGAATGTCATTAGGAGTCATTT
ATTGTTACATGGTTTTTTGTTTGCTTGTTTGTTTGGTTTTTGGTTTTTGT
TTTTTGGGGGTTTTTTTTNNCTTGNNNTNNTTTTTTTTNNNTTTNTTNTT
TTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTNTTTTTTT
TNNTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTNTTTTTCTTTTTTTTTTTNTCTTNNTTTTTNTTTNNNNTTTNN
TTTTTTTTNTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTNTNTTTTTTTT
TNNTTTTTTTTTTTTTTTTTGTNTTCTTTTCTTTTCNCTCCCCTCTTTTT
CTTTTTTNTNTCTCCCCTTTCCCTCTCCGTTTCTTTCTTTCTGCTTTCGC
CCCCTGCTTTCTTCTCCTCGCTTCGCTCTTCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no349_f07.b1 MSMg01no349_f07.b1 CHROMAT_FILE:
MSMg01no349_f07.b1 PHD_FILE: MSMg01no349_f07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:40:54 2005
         (512 letters)



>mm_chrX_54606078_54606989
          Length = 912

 Score =  951 bits (492), Expect = 0.0
 Identities = 504/508 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcccagcctctagggctgtgagaaatttctgttgtttatgagccatcaaaggtatg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 763 gaattcccagcctctagggctgtgagaaatttctgttgtttatgagccatcaaaggtatg 704

                                                                       
Query: 65  tacgtaagtgaacccaagaagagtatgaagattcttgggcagggccaacgacccagttga 124
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 703 tacgtaagtgaacccaagaagagtatgaagattcttgggcaggaccaacgacccagttga 644

                                                                       
Query: 125 agctaggctagttgaggtcagccaagcttgcattcttaaaagagagaaaaaataaaattt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 agctaggctagttgaggtcagccaagcttgcattcttaaaagagagaaaaaataaaattt 584

                                                                       
Query: 185 gatagttcattttcaaaattgcctccagccagtttagctccaaatacagacacacaaaaa 244
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 gatagttcattgtcaaaattgcctccagccagtttagctccaaatacagacacacaaaaa 524

                                                                       
Query: 245 gcactagactcccgatgatgctttctcatttagctagccccaccttcaagactatgttaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 gcactagactcccgatgatgctttctcatttagctagccccaccttcaagactatgttaa 464

                                                                       
Query: 305 gccaatttcccacccaaactagaaatttggagtagaaaattgctaacagctaaggaagtc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 gccaatttcccacccaaactagaaatttggagtagaaaattgctaacagctaaggaagtc 404

                                                                       
Query: 365 tgcaaccccgggagcctgaaagttttaacataaaaacaatgtaaaatgcagagatgtatc 424
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 403 tgcaaccccgggagcctgaaagttttaacataaaaacaatgtaaaatgcagagatgtagc 344

                                                                       
Query: 425 catgcactcagagatgaaccatgcatggttttattgagaaacagatagatgtaagcaaca 484
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 343 catgcactcagagatgaaccatgcatggttttattgagaaactgatagatgtaagcaaca 284

                                       
Query: 485 gagagaaaggtaatacctaacctagatg 512
           ||||||||||||||||||||||||||||
Sbjct: 283 gagagaaaggtaatacctaacctagatg 256


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 912
Length adjustment: 10
Effective length of query: 502
Effective length of database: 902
Effective search space:   452804
Effective search space used:   452804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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