BAC Information

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BAC

Clone NameMSMg01-350A23
ChromosomeX (Build37)
Map Location 84,682,663 - 84,842,505
singlet/doubletdoublet
Overlap genenone
Upstream geneIl1rapl1
Downstream geneLOC667876, EG667883, LOC667891
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-350A23.T7 (MSMg01no350_a23.b1)MSMg01-350A23.TJ (MSMg01no350_a23.g1)
ACCAG461765AG461766
length762763
length of high quality
(start - end)		523 (79 - 601)433 (81 - 513)
definitionCHROMAT_FILE: MSMg01no350_a23.b1 PHD_FILE: MSMg01no350_a23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:41:52 2005CHROMAT_FILE: MSMg01no350_a23.g1 PHD_FILE: MSMg01no350_a23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:41:52 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,842,014 - 84,842,505)(84,682,663 - 84,683,095)
sequence
NNNNAATTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGACCC
GCGGAATTCTTTTATTTTTCCTTCAATATTTGATATTTTATTTTTTTACA
TTTCAAATGTTATTCCCTTTCCTGATTCCCCACTAGAAACCCCTTAAGCC
CATGCTCCCTCTCCCTGCTTCTATGAGGGTGTTCCCTCACCCACTCACAC
ACTCCTGCCTCTCTGCTCTTGCATTCCCCTACACTGGGGCATTGAGCCTT
CACAGGACCAAGGGCCTCTTCTGCCACTGATGCCCAGTAAGGCATCATAT
ACGGCTGGAAGATGCTGATTTTTACTTTGCTTATAGACAGAATTCATACA
CATTCGCTTGGTGGTAGTTTTTGTAATAGCTGGTACCTCTACTCAATAAT
GCTTCGTTGCTGAAATCTAGTAATTTACTAGTTAGTACCCAATCACCAGC
ATATTTAGAACTTTAAAGAATGACAATATTCTACCTATGACTCATACCAT
TCTCTAGTCCCAAAGATTTGGAATTGAGAAACCCAGGCTTGAACAAAGCC
CATTAATACCCAGTATATTACCTATATGCATTTGTCTCATATATATGAAC
TTTGTTTTGACATTTTAGTCTATTATAATGAACTAAATTAGACCTTGGTC
ATGGTTATCCCCACCCTTCAGATATAATGTCCCCCTAACCAAAGGAATAA
AATTTATCCTTGGGGTTTTGCTGAAATAAATTTGAAACACTGGGAAACCG
GCATTTTAACAC

NNNNCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCATTGTATTCAAGACAGTG
ATATAGTAGGACTAAGGCATCTAATGACCTTACTACATAGACATATTTCT
CTTACAATAAACTTGCAACTGATTTTATTTTCTCACAGTATTTTCATGGT
GAAGATACAGAATTTACCTCAACCCTCTCTCTTTTTTCTAAGACTGGTAG
TATTCATAGATACTTTAAAAATAAACAAATGTATTAGAATGTGTAATTCT
TATTAATATCAATTTAGGCAAACAGATAGATATTTGATCAATAGACATAT
TTATTTCCTTTTTACTGTTATTTACTTTTTCTGTACTCAGGATTTATCCT
AAGGCCTCATAGATGCTAGGCACTCATCCATAACCGAGCCACATACTTGA
CCCTGTTTACTTCTTGAAGGGAAGTTCTTATCTTTATATTTGATAGCAAG
GTCTATCCTGGCCCATACNATTACTCCTTTGGGTACCATAATATTATGAA
AAAAACTTACTCTGAGATTTATGAAGGCTGGGCANTTTCTTTATTTCCAT
TACTGGACCGGGAAAAAAGCAATTACATATTCTTTTATTCTTAAATTGGA
AAAACTGAGAAATCCCCCGCTTTGAATTCCAAAACTCTTTCCCCAAAAAA
CTAAAGCCCCGACCCCTTTTTTAAAGTGGCCGGGTTTGTGAACCCCCAAA
CCAAGGGAAAGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no350_a23.b1 MSMg01no350_a23.b1 CHROMAT_FILE:
MSMg01no350_a23.b1 PHD_FILE: MSMg01no350_a23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:41:52 2005
         (523 letters)



>mm_chrX_84841583_84842505
          Length = 923

 Score =  936 bits (484), Expect = 0.0
 Identities = 490/492 (99%)
 Strand = Plus / Minus

                                                                       
Query: 32  ttattccctttcctgattccccactagaaaccccttaagcccatgctccctctccctgct 91
           ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 923 ttattccttttcctgattccccactagaaaccccttaagcccatgctccctccccctgct 864

                                                                       
Query: 92  tctatgagggtgttccctcacccactcacacactcctgcctctctgctcttgcattcccc 151
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 863 tctatgagggtgttccctcacccactcacacactcctgcctctctgctcttgcattcccc 804

                                                                       
Query: 152 tacactggggcattgagccttcacaggaccaagggcctcttctgccactgatgcccagta 211
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 tacactggggcattgagccttcacaggaccaagggcctcttctgccactgatgcccagta 744

                                                                       
Query: 212 aggcatcatatacggctggaagatgctgatttttactttgcttatagacagaattcatac 271
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 aggcatcatatacggctggaagatgctgatttttactttgcttatagacagaattcatac 684

                                                                       
Query: 272 acattcgcttggtggtagtttttgtaatagctggtacctctactcaataatgcttcgttg 331
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 acattcgcttggtggtagtttttgtaatagctggtacctctactcaataatgcttcgttg 624

                                                                       
Query: 332 ctgaaatctagtaatttactagttagtacccaatcaccagcatatttagaactttaaaga 391
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 ctgaaatctagtaatttactagttagtacccaatcaccagcatatttagaactttaaaga 564

                                                                       
Query: 392 atgacaatattctacctatgactcataccattctctagtcccaaagatttggaattgaga 451
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 atgacaatattctacctatgactcataccattctctagtcccaaagatttggaattgaga 504

                                                                       
Query: 452 aacccaggcttgaacaaagcccattaatacccagtatattacctatatgcatttgtctca 511
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 aacccaggcttgaacaaagcccattaatacccagtatattacctatatgcatttgtctca 444

                       
Query: 512 tatatatgaact 523
           ||||||||||||
Sbjct: 443 tatatatgaact 432


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 523
Length of database: 923
Length adjustment: 10
Effective length of query: 513
Effective length of database: 913
Effective search space:   468369
Effective search space used:   468369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no350_a23.g1 MSMg01no350_a23.g1 CHROMAT_FILE:
MSMg01no350_a23.g1 PHD_FILE: MSMg01no350_a23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:41:52 2005
         (433 letters)



>mm_chrX_84682463_84683295
          Length = 833

 Score =  814 bits (421), Expect = 0.0
 Identities = 430/433 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcattgtattcaagacagtgatatagtaggactaaggcatctaatgaccttactacatag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcattgtattcaagacagtgatatagtaggactaaggcatctaatgaccttactacatag 260

                                                                       
Query: 61  acatatttctcttacaataaacttgcaactgattttattttctcacagtattttcatggt 120
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acatatttctcttacaaaaaacttgcaactgattttattttctcacagtattttcatggt 320

                                                                       
Query: 121 gaagatacagaatttacctcaaccctctctcttttttctaagactggtagtattcataga 180
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 321 gaagatacagaatttacctcaaccctctctcttttttctaagattggtagtattcataga 380

                                                                       
Query: 181 tactttaaaaataaacaaatgtattagaatgtgtaattcttattaatatcaatttaggca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tactttaaaaataaacaaatgtattagaatgtgtaattcttattaatatcaatttaggca 440

                                                                       
Query: 241 aacagatagatatttgatcaatagacatatttatttcctttttactgttatttacttttt 300
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 441 aacagatagatatttgatcaatagacaaatttatttcctttttactgttatttacttttt 500

                                                                       
Query: 301 ctgtactcaggatttatcctaaggcctcatagatgctaggcactcatccataaccgagcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctgtactcaggatttatcctaaggcctcatagatgctaggcactcatccataaccgagcc 560

                                                                       
Query: 361 acatacttgaccctgtttacttcttgaagggaagttcttatctttatatttgatagcaag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acatacttgaccctgtttacttcttgaagggaagttcttatctttatatttgatagcaag 620

                        
Query: 421 gtctatcctggcc 433
           |||||||||||||
Sbjct: 621 gtctatcctggcc 633


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 433
Length of database: 833
Length adjustment: 9
Effective length of query: 424
Effective length of database: 824
Effective search space:   349376
Effective search space used:   349376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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