BAC Information

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BAC

Clone NameMSMg01-350E06
ChromosomeX (Build37)
Map Location 101,167,953 - 101,254,330
singlet/doubletdoublet
Overlap geneRnf12
Upstream geneEG331480, EG668382, LOC668387, EG245545, LOC100042610, EG621205, Nap1l2, LOC668217, 4930519F16Rik, LOC100042615, Cdx4, LOC671052, Chic1, Tsx, Tsix, Xist, Rps12-ps1, LOC668406, LOC676246, ENSMUSG00000043661, LOC668412, LOC668415, B230206F22Rik, Cnbp2, LOC100042640, Slc16a2, EG621381, EG668426, LOC668430
Downstream geneC77370, Vcp-ps, EG621542, Uprt, Zdhhc15, Magee2, LOC622098, LOC676331, 5530601H04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-350E06.T7 (MSMg01no350_e06.b1)MSMg01-350E06.TJ (MSMg01no350_e06.g1)
ACCAG461919AG461920
length742753
length of high quality
(start - end)		567 (53 - 619)485 (85 - 569)
definitionCHROMAT_FILE: MSMg01no350_e06.b1 PHD_FILE: MSMg01no350_e06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:42:08 2005CHROMAT_FILE: MSMg01no350_e06.g1 PHD_FILE: MSMg01no350_e06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:42:08 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,253,768 - 101,254,330)(101,167,953 - 101,168,437)
sequence
TTTTTTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTCCACTGTTCATTTTTAGTTAGTCTCTAGCTTGAGAAT
CAGTATCATGGCCTCAGGTGGTTATCTATTTTTTATTCATTTATTTTGGA
GGCAACGTCTTTCTATGTAGCCAAGCTAGCCTCAAGCTTGCTATATAGAT
GCTGGACAGGTTGGCAGGATGCTAGAATGGCAAATGAGAAGGAAGACCCT
CACCTTTGAGTAGGGAAATAAAGAAATTGGACTATTAACAGAATGTAGAT
AGGATAAAAGAAAGACGTTCTTCTCTTAAGGTCATGTTATATGGTGTATA
ATTTTAGGGATGAGCATAATCCTTACACTGAGTTGATGGATATTCTTAAA
GAGCTTATCAAAGAATTTATCACTGAAATGACACAACACAATGTCAACTG
GAAGACAAGGTCAAGTGCAAATTGAAGATATTGTCTTCTTGATTCTACGG
CACTTACCACTCTAGTGGATCATATGAACCTGGGAGAATGGAGGCTATAA
ATGAGATGGACTACTGTCTTGCTAATAGCCAACTTTATTCAGTGCCTCAA
AGTATTTGTACTCTGGGGGTTAAGATGAGTCATGAGACTTCAATGTATAA
GCCATGCATGGCAAAACCATGTTTCTCCCTAGAGGCAATAAACCAATAAC
CATATCCCACTGTGATGAATAACCTGAAGTGAGCCCCCTCCN

NNNNNNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGGCCAGTTTGGTCT
ACACACTAAGTTGCAGTCTAGCTTGATACTATAAAAGACTGCATTTTTAA
AAAAGGAGGAGAGAGGAAGAAGGAAGAAACAGAAAGACACCTTCAAATAG
AAAGGTGTAAAGCAAAGGACACCCAGTGTCAAACTAGAGCCAAGAATTAA
CAAAAACAGGAAAGCCAATAATTCTTTCTTTTTATAACAAAACTGCTCCC
AAATGGAGATGTTTATCAGCACCTTAAAGCAAGCAAACTACCTAAATCTA
TAGTCATATTGTGTAGAAGTTAATAAAAAACAGAGTGAATTCAAAAGACC
CTCTGCACTAAAATGTCATTAAGTACAGGTATGTATGTCTGGGAAAATGG
TAATATTGAGCTGTATGTTCCAATGACACAAAATTCTACCGCCTTCTTGG
TAAGGTCACAAAACAGAATANAAGACCAGCTCAATTTCTTTTTACGTCCA
TGACGTACTGTTCTATAGTCCCCCTACATATTCGAAAAACTCTCCATATA
TTTCTGCAGCATATTTCCTATTCCACCTTCAAGCAAAATAGCAAAGGCTT
GCTAAATAAAACAGAGTTGGTTAAGGCAGTGGCTTCCCTCAAAAGTTTGT
GGCTTTATTAATTTTGGGAAACAGGGGAAAATCAAAATATCCCACCTGAC
TTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no350_e06.b1 MSMg01no350_e06.b1 CHROMAT_FILE:
MSMg01no350_e06.b1 PHD_FILE: MSMg01no350_e06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:42:08 2005
         (567 letters)



>mm_chrX_101253405_101254371
          Length = 967

 Score = 1050 bits (543), Expect = 0.0
 Identities = 558/563 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctccactgttcatttttagttagtctctagcttgagaatcagtatcatggcctca 64
           |||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 926 gaattctccactgaagatttttagttagtctctagcttgagaatcagtatcatggcctca 867

                                                                       
Query: 65  ggtggttatctattttttattcatttattttggaggcaacgtctttctatgtagccaagc 124
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 866 ggtggttatttattttttattcatttattttggaggcaacgtctttctatgtagccaagc 807

                                                                       
Query: 125 tagcctcaagcttgctatatagatgctggacaggttggcaggatgctagaatggcaaatg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 tagcctcaagcttgctatatagatgctggacaggttggcaggatgctagaatggcaaatg 747

                                                                       
Query: 185 agaaggaagaccctcacctttgagtagggaaataaagaaattggactattaacagaatgt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 agaaggaagaccctcacctttgagtagggaaataaagaaattggactattaacagaatgt 687

                                                                       
Query: 245 agataggataaaagaaagacgttcttctcttaaggtcatgttatatggtgtataatttta 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 agataggataaaagaaagacgttcttctcttaaggtcatgttatatggtgtataatttta 627

                                                                       
Query: 305 gggatgagcataatccttacactgagttgatggatattcttaaagagcttatcaaagaat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 gggatgagcataatccttacactgagttgatggatattcttaaagagcttatcaaagaat 567

                                                                       
Query: 365 ttatcactgaaatgacacaacacaatgtcaactggaagacaaggtcaagtgcaaattgaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 ttatcactgaaatgacacaacacaatgtcaactggaagacaaggtcaagtgcaaattgaa 507

                                                                       
Query: 425 gatattgtcttcttgattctacggcacttaccactctagtggatcatatgaacctgggag 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 gatattgtcttcttgattctacggcacttaccactctagtggatcatatgaacctgggag 447

                                                                       
Query: 485 aatggaggctataaatgagatggactactgtcttgctaatagccaactttattcagtgcc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 aatggaggctataaatgagatggactactgtcttgctaatagccaactttattcagtgcc 387

                                  
Query: 545 tcaaagtatttgtactctggggg 567
           ||| |||||||||||||||||||
Sbjct: 386 tcagagtatttgtactctggggg 364


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 967
Length adjustment: 10
Effective length of query: 557
Effective length of database: 957
Effective search space:   533049
Effective search space used:   533049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no350_e06.g1 MSMg01no350_e06.g1 CHROMAT_FILE:
MSMg01no350_e06.g1 PHD_FILE: MSMg01no350_e06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:42:08 2005
         (485 letters)



>mm_chrX_101167753_101168637
          Length = 885

 Score =  924 bits (478), Expect = 0.0
 Identities = 483/485 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaggccagtttggtctacacactaagttgcagtctagcttgatactataaaagactgcat 60
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaggccagtctggtctacacactaagttgcagtctagcttgatactataaaagactgcat 260

                                                                       
Query: 61  ttttaaaaaaggaggagagaggaagaaggaagaaacagaaagacaccttcaaatagaaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttttaaaaaaggaggagagaggaagaaggaagaaacagaaagacaccttcaaatagaaag 320

                                                                       
Query: 121 gtgtaaagcaaaggacacccagtgtcaaactagagccaagaattaacaaaaacaggaaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgtaaagcaaaggacacccagtgtcaaactagagccaagaattaacaaaaacaggaaag 380

                                                                       
Query: 181 ccaataattctttctttttataacaaaactgctcccaaatggagatgtttatcagcacct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccaataattctttctttttataacaaaactgctcccaaatggagatgtttatcagcacct 440

                                                                       
Query: 241 taaagcaagcaaactacctaaatctatagtcatattgtgtagaagttaataaaaaacaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taaagcaagcaaactacctaaatctatagtcatattgtgtagaagttaataaaaaacaga 500

                                                                       
Query: 301 gtgaattcaaaagaccctctgcactaaaatgtcattaagtacaggtatgtatgtctggga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtgaattcaaaagaccctctgcactaaaatgtcattaagtacaggtatgtatgtctggga 560

                                                                       
Query: 361 aaatggtaatattgagctgtatgttccaatgacacaaaattctaccgccttcttggtaag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaatggtaatattgagctgtatgttccaatgacacaaaattctaccgccttcttggtaag 620

                                                                       
Query: 421 gtcacaaaacagaatanaagaccagctcaatttctttttacgtccatgacgtactgttct 480
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtcacaaaacagaataaaagaccagctcaatttctttttacgtccatgacgtactgttct 680

                
Query: 481 atagt 485
           |||||
Sbjct: 681 atagt 685


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 885
Length adjustment: 10
Effective length of query: 475
Effective length of database: 875
Effective search space:   415625
Effective search space used:   415625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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