Query= MSMg01no351_b10.b1 MSMg01no351_b10.b1 CHROMAT_FILE:
MSMg01no351_b10.b1 PHD_FILE: MSMg01no351_b10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:43:15 2005
(572 letters)
>mm_chrX_65925165_65926136
Length = 972
Score = 1075 bits (556), Expect = 0.0
Identities = 565/568 (99%)
Strand = Plus / Minus
Query: 5 gaattctggtccagacttcctttaatggtgagctgacctgacagtgtaagtcagataaac 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 897 gaattctggtccagacttcctttaatggtgagctgacctgacagtgtaagtcagataaac 838
Query: 65 cagtcctttccccaagtagtttttggttgaattattttgtcacagcaatagaaaacaaat 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 837 cagtcctttccccaagtagtttttggttgaattattttgtcacagcaatagaaaacaaat 778
Query: 125 taggagggaaggtatgtctagtttctacttaacttgtgtctttctgtagtgttgttttgc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 777 taggagggaaggtatgtctagtttctacttaacttgtgtctttctgtagtgttgttttgc 718
Query: 185 agggagtcttcttgatcagcctcaccctgcctgaacctgaagttctattacattatactt 244
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 717 agggagtcttcttgatcagcctcaccctgcctgaatctgaagttctattacattatactt 658
Query: 245 ttctaaaatccagaactgaagtcccccaaagcgaagttactgtagtataaataatcactt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 ttctaaaatccagaactgaagtcccccaaagcgaagttactgtagtataaataatcactt 598
Query: 305 catagattctgcagtcggaaagaaaattcatcagacacatccaggtaaagagacttgcta 364
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 catagattctgcagtcagaaagaaaattcatcagacacatccaggtaaagagacttgcta 538
Query: 365 ggaggcataggatgtttggaacagaaaggcgcatacaacatttgagaaaacgtgagagca 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 ggaggcataggatgtttggaacagaaaggcgcatacaacatttgagaaaacgtgagagca 478
Query: 425 actaaaaggataatgtgatagcccaaataaaggtcagaactgttaagatcaaaacattat 484
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 actaaaaggataatttgatagcccaaataaaggtcagaactgttaagatcaaaacattat 418
Query: 485 aacccaaaccctagctcaaaatataaaacacagagagatagccaccatgaataatcagga 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 aacccaaaccctagctcaaaatataaaacacagagagatagccaccatgaataatcagga 358
Query: 545 tatttggatgaaagataggaaaattggt 572
||||||||||||||||||||||||||||
Sbjct: 357 tatttggatgaaagataggaaaattggt 330
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 972
Length adjustment: 10
Effective length of query: 562
Effective length of database: 962
Effective search space: 540644
Effective search space used: 540644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no351_b10.g1 MSMg01no351_b10.g1 CHROMAT_FILE:
MSMg01no351_b10.g1 PHD_FILE: MSMg01no351_b10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:43:15 2005
(482 letters)
>mm_chrX_65784776_65785657
Length = 882
Score = 874 bits (452), Expect = 0.0
Identities = 473/482 (98%), Gaps = 4/482 (0%)
Strand = Plus / Plus
Query: 1 taaacaccaacagctctccaagaatccccttggactccagcactgttttgggactgctaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 taaacaccaacagctctccaagaatccccttggactccagcactgttttgggactgctaa 264
Query: 61 gggatccatccagtcatgtacactgagcagctactccattgtgacctttctatgaggaga 120
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gg----catccagtcatgtacactgagcagctactccattgtgacctttctatgaggaga 320
Query: 121 cagcctttgttggaccacccagaccactgcctgttaacactctatgtaatctctatccat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagcctttgttggaccacccagaccactgcctgttaacactctatgtaatctctatccat 380
Query: 181 tctcctcttttagagagacctgactaacacactatgctttctacataacctgtgtacctg 240
|||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 381 tctcttcttttagagagacctgactaacacactatgctttctccataacctgtgtacctg 440
Query: 241 ctccacttttctgaagatccgaagcaggtttcctcaaaggacatcttgaagctcttgtcc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctccacttttctgaagatccgaagcaggtttcctcaaaggacatcttgaagctcttgtcc 500
Query: 301 atcccagcctcaactcagcaactcatcaattagcaatggaacagatgaggaccaagatct 360
||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct: 501 atcccagcctcaactcagcaactcatcaattagcaatggaacacatgaagaccaagatct 560
Query: 361 agggtatcccagtgaaattgaagcatagtggcaaagagtaacctcacagaagcatgctac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agggtatcccagtgaaattgaagcatagtggcaaagagtaacctcacagaagcatgctac 620
Query: 421 ctgaacatcattgcaaagaggacaagctggtagctgccttggaagactgagctctcttca 480
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctgaacatcatcgcaaagaggacaagctggtagctgccttggaagactgagctctcttca 680
Query: 481 gc 482
||
Sbjct: 681 gc 682
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 882
Length adjustment: 10
Effective length of query: 472
Effective length of database: 872
Effective search space: 411584
Effective search space used: 411584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
