BAC Information

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BAC

Clone NameMSMg01-351G12
ChromosomeX (Build37)
Map Location 144,015,615 - 144,016,106
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666730, EG245663, Htr2c, Il13ra2, V1rb10, Lrch2
Downstream geneLOC100039462, LOC666789, LOC434863, EG623995, EG624023, LOC666184, LOC100039511, LOC666812, LOC100039519, LOC434864, EG624096, LOC100039545, LOC666837, LOC100039553, LOC100034729
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-351G12.T7 (MSMg01no351_g12.b1)MSMg01-351G12.TJ (MSMg01no351_g12.g1)
ACCAG462786AG462787
length738736
length of high quality
(start - end)		496 (53 - 548)456 (84 - 539)
definitionCHROMAT_FILE: MSMg01no351_g12.b1 PHD_FILE: MSMg01no351_g12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:43:38 2005CHROMAT_FILE: MSMg01no351_g12.g1 PHD_FILE: MSMg01no351_g12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:43:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNTTTTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCATTGATTAAAGGAACAGCAGTTGGAGTTAGGTGGATAA
TTAAACTGTAATATTTCCTTCAAATAAGAATGTAATCTAGTAAGGAATTC
CTATGTCCTATTAAAGTATGTTTAGCCCTCTTCTTACTCTCCTCATTGAG
CTGTGTTACTCACAACTACAACAGCACCAAGATGGTAGACCTGAGATCTG
GTTATTGATGCAGGACCAGGCTAGAAGCTGAGGGCTAAATAATTCACCAG
CAGCATATCAGAGGGTATGACCACAGTGGGATTCTGCCACAAACTGTTAT
TACTCATTTCATGAAAAAGATGAAGGATTACTCTTTGGGAAGGACCTCAA
TTACATCTCTTCTCTCTGTATAAGCTTAGGTAATGGAACCCATTAACCTG
GCAAACCTAACAAGAAAAAGAGTAAAAGAAAACACCTGGGGTGAGAGACA
CTGGAGGATCAAAGTCCTATGTCCAATGTAGTGGAAACAGCAAAGATTCA
AAGGCAACCGCTGGAACAGATAAGAATATTGCTGGAACAGATAAAAATAT
GTAAAGCATGTTGCTCATGTCAAGATTAGGCCAAGTCTTAGATATGCATA
TTTAATGTTCAGAATCCACATGAGGGATAATAAAAATGAGCATAAGTGGC
TGTTTGCCCTATTTTATGGGTTTTAACCATTTATGATA

NNNNNCCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCATTGTGTCCCATA
AGTTTGGGAATGTTGTGGCTTCATTTTCATTAGTCTCTAAAAAGTCATTA
ATTTCTTTCTTTATTTCTTCCTTGACCAAGGTATCATTGAGAAGAGTGTT
GTTCAGTTTCCACGTGAATGTTGGCTTTCTATTACTTATGTGGTTATTGA
AGATCCGCCTTAGTCCATGGTAATCTGATAGGATGCATGGGATCACTTCA
ATATTTTTGTATCTATTGAGTCCTGTTTTGTGACCAATTATATGGTCAGT
TTTGGAGGAGGTACCATGAGGTGCTGAAAAGAAGATATATCCTTTTGTTT
TAGGATAAATTGTTCTGTAGATATCTGTTAAATCCATTTTTTTCATAACT
TCTGTTAGTGTCCATGTGTCTCTGTTTAGTTTCTGTTTCCAGGATCTGTC
CATCGAGTGTGGGGTGTTAAAGTCTCCCACTATTATTGTGTGAGGTGCAA
TGTGTGCTTTATGCTTTACTAAAGNTTCTTTTAAAAATGTGGCTGCTCTT
GTATTTGGAGCATATATATTTATAATTGGNAGTTCATCTTTGGAAATTTT
ACCCTTGATGAATATTAAGTGGCCCTCCTCTGCTTTTTGATAACTTTGGT
TGGAAGTCAATTTTTTTCTAACTTTAACGGATCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no351_g12.b1 MSMg01no351_g12.b1 CHROMAT_FILE:
MSMg01no351_g12.b1 PHD_FILE: MSMg01no351_g12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:43:38 2005
         (496 letters)



>mm_chrX_144015411_144016306
          Length = 896

 Score =  951 bits (492), Expect = 0.0
 Identities = 492/492 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcattgattaaaggaacagcagttggagttaggtggataattaaactgtaatattt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattgattaaaggaacagcagttggagttaggtggataattaaactgtaatattt 264

                                                                       
Query: 65  ccttcaaataagaatgtaatctagtaaggaattcctatgtcctattaaagtatgtttagc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ccttcaaataagaatgtaatctagtaaggaattcctatgtcctattaaagtatgtttagc 324

                                                                       
Query: 125 cctcttcttactctcctcattgagctgtgttactcacaactacaacagcaccaagatggt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cctcttcttactctcctcattgagctgtgttactcacaactacaacagcaccaagatggt 384

                                                                       
Query: 185 agacctgagatctggttattgatgcaggaccaggctagaagctgagggctaaataattca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agacctgagatctggttattgatgcaggaccaggctagaagctgagggctaaataattca 444

                                                                       
Query: 245 ccagcagcatatcagagggtatgaccacagtgggattctgccacaaactgttattactca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ccagcagcatatcagagggtatgaccacagtgggattctgccacaaactgttattactca 504

                                                                       
Query: 305 tttcatgaaaaagatgaaggattactctttgggaaggacctcaattacatctcttctctc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tttcatgaaaaagatgaaggattactctttgggaaggacctcaattacatctcttctctc 564

                                                                       
Query: 365 tgtataagcttaggtaatggaacccattaacctggcaaacctaacaagaaaaagagtaaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tgtataagcttaggtaatggaacccattaacctggcaaacctaacaagaaaaagagtaaa 624

                                                                       
Query: 425 agaaaacacctggggtgagagacactggaggatcaaagtcctatgtccaatgtagtggaa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 agaaaacacctggggtgagagacactggaggatcaaagtcctatgtccaatgtagtggaa 684

                       
Query: 485 acagcaaagatt 496
           ||||||||||||
Sbjct: 685 acagcaaagatt 696


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 896
Length adjustment: 10
Effective length of query: 486
Effective length of database: 886
Effective search space:   430596
Effective search space used:   430596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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