NNNNAAAATTTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCGCGGAATTCCTTATAATCCTCAAGGACAAGGCAATGTGGAATGG
GCCTATGGAACTTTAAAACAATAACTTCATAAAATTAAAAATGGGGAATT
ATACCCCCCTGTATACCACAAAACTTTTTAAATCATGCTCTTTTATTTTA
ATTTTTTTAAAAAAAATTTAGATATGCATGGACATTCAACAGCTGAGCAT
TTTTGTCATCCTAACACTTCAACTACGTATACTTCAGTGAAGCGGAAGGA
TCCCATGAAAGGCCAATGGCATGGACAGGACCCTGAACTCATATGGGGAC
AAGGTCACATTTAGGTTTTTTCACAGGAAGAAAATGGGGCTCAGTGGTTG
CCAGAGAGGCTGGTGCAACAAATGGAACAACCCCATGCTCCTGCTGATTC
CCCTACTGATGATGATGTTTCCTGCACATGGTGAAGCCCACTGGGCCTAT
GTTCCTGACCTACTACTGATACATCCAGCAGTATGGACCAGACTGGAGGT
TCTTGTCACCAGTAACAATACTCAACTTCTTGGACCCCCTTGGACAAGGG
ATTCAATTTATAATAAGGCTGTGACTTTCAATTCATTGGGTAATGGGATT
CTTATTAGCTTTGTGAAGAATAGTACAAATGATGGGTGTATTTCAGTGTT
TCCTCAAATGTGGATGAAAAAGGTT

NNNNNNNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGAATGGTTCAGGA
GTCTGATGAAGGTAGAGGAGAGGTGTTGAAGAGTAGGAGGCTCCCTGGGA
TAGCAGGCTATTCAAGGCAGCTTGGCTTGGCCCATAAGGCTCAGCAAGCA
GGGAAGATGGGCGGGAAAAGGGATTCTATCCTCTATTATCCAAGAGTCTG
ATGAAGGTATAGGACAGGTGGTAGTAGAATAGAAGTCCCTCAGGTATAGT
GAAAGAACCTAGTGGGGAAACACCCACTCATATCCCGAGTCAGACCTCTG
AGGACTATCAATAGCAGGCTGCTCCAGGCAGCTTGGATTGGCTGAGAGGG
TTCCCCAATTTGATTTTTGATAAGTTCATACCCAATAACATGGCTGCTCT
GGCAAGCAATCATATCCAAAGTTTTTCTGGGTCTCTGTAATCTGGCTGGA
AAGTAGATATTCTGGATTACTCTATGATCTGGCTAGAATACAGACAGGTC
CTTACACCTTTAATAGCAAACAATGTAGGTAAGTTTAATTTGTAGAAGGA
AACCATTATGTTTGCAAGTGACTTCTAATTGAGAGAAGATAACAAATCAA
AGCAAGGTCTGTCAGAATGACTTATACAGAAGATATACCCCTCTCCCGAG
AAAAGCCCAGGAATGATGTACCTGGCCCTGTCCCTGGAAAAAAG

Query= MSMg01no351_m15.b1 MSMg01no351_m15.b1 CHROMAT_FILE:
MSMg01no351_m15.b1 PHD_FILE: MSMg01no351_m15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:44:07 2005
         (602 letters)



>mm_chrX_4282950_4283951
          Length = 1002

 Score = 1033 bits (534), Expect = 0.0
 Identities = 582/598 (97%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccttataatcctcaaggacaaggcaatgtggaatgggcctatggaactttaaaa 63
           ||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct: 204 ggaattcattataatcctcaaggacaaggcattgtggaatgggtctatggaactttaaaa 263

                                                                       
Query: 64  caataacttcataaaattaaaaatggggaattatacccccctgtataccacaaaactttt 123
           ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 caataccttcataaaataaaaaatggggaattatacccccctgtataccacaaaactttt 323

                                                                       
Query: 124 taaatcatgctcttttattttaatttttttaaaaaaaatttagatatgcatggacattca 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 taaatcatgctcttttattttaatttttttaaaaaaaatttagatatgcatggacattca 383

                                                                       
Query: 184 acagctgagcatttttgtcatcctaacacttcaactacgtatacttcagtgaagcggaag 243
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 384 acagctgagcatttttgtcatcctaacacttcaactacgtatacttcagtgaagtggaag 443

                                                                       
Query: 244 gatcccatgaaaggccaatggcatggacaggaccctgaactcatatggggacaaggtcac 303
           |||||||||| |||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct: 444 gatcccatgacaggccaatggcatggacaggaccctgtactcgtatggggacaaggtcac 503

                                                                       
Query: 304 atttaggttttttcacaggaagaaaatggggctcagtggttgccagagaggctggtgcaa 363
           |||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 504 atttgggttttttcacaggaagaaaatggggctcagtggttgccagagagggtggtgcaa 563

                                                                       
Query: 364 caaatggaacaaccccatgctcctgctgattcccctactgatgatgatgtttcctgcaca 423
           ||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct: 564 caaatggaacaaccccatgctcctgctgattcccctacttatgatgatgattcctgcaca 623

                                                                       
Query: 424 tggtgaagcccactgggcctatgttcctgacctactactgatacatccagcagtatggac 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tggtgaagcccactgggcctatgttcctgacctactactgatacatccagcagtatggac 683

                                                                       
Query: 484 cagactggaggttcttgtcaccagtaacaatactcaacttcttggacccccttggacaag 543
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 684 cagactggaggttcttgtcaccagtaataatactcaacttcttggacccccttggacaag 743

                                                                     
Query: 544 ggattcaatttataataaggctgtgactttcaattcattgggtaatgggattcttatt 601
           ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct: 744 ggattcaatttataataagactgtgactttcaatgcattgggtaatgggattcttatt 801


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 602
Length of database: 1002
Length adjustment: 10
Effective length of query: 592
Effective length of database: 992
Effective search space:   587264
Effective search space used:   587264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)