Query= MSMg01no352_f24.b1 MSMg01no352_f24.b1 CHROMAT_FILE:
MSMg01no352_f24.b1 PHD_FILE: MSMg01no352_f24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:44:54 2005
(473 letters)
>mm_chrX_160551658_160552530
Length = 873
Score = 793 bits (410), Expect = 0.0
Identities = 435/450 (96%), Gaps = 12/450 (2%)
Strand = Plus / Minus
Query: 24 actacagagtaagtttggggccagtctgggccacatggtaagactttgtcccaaaacaaa 83
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 866 actacagagtaagtttggggccagtctgggccacatggtaagactttgtcccaaaacaaa 807
Query: 84 aaatcttggtggatttttgaaataaggaacacacacacagacaaacacactcacacactg 143
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct: 806 aaatcttggtggatttttgaaataaggaacacacaaacagacaaacacacacacacactg 747
Query: 144 gcatatacttacgtacatatacatactatctgtgatatggcaaatatatatatatatata 203
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 gcatatacttacgtacatatacatactatctgtgatatggcaaatatatatatatat--- 690
Query: 204 tatatacatatatatatatatatcaaacatactgaaatatgcaattcaaaggtaatctga 263
|||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 689 -------atatatatatatatat--aacatactgaaatatgcaattcaaaggtaatctga 639
Query: 264 gaaacatggccagtatctactggccagccagtttcttctgtaaaacatagttttgtgggg 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 gaaacatggccagtatctactggccagccagtttcttctgtaaaacatagttttgtgggg 579
Query: 324 ttagaaaaataatgacacagagctaagtatgtgcagatcaatgcaagggatctaacctcc 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 ttagaaaaataatgacacagagctaagtatgtgcagatcaatgcaagggatctaacctcc 519
Query: 384 cctattccaactgcaaaggaagaacaaaccatcaggcatcaaagtgaatagggaataaat 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 cctattccaactgcaaaggaagaacaaaccatcaggcatcaaagtgaatagggaataaat 459
Query: 444 catagaaaaagacaaacagcagatgagttt 473
|| |||||||||||||||||||||||||||
Sbjct: 458 caaagaaaaagacaaacagcagatgagttt 429
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 69
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 873
Length adjustment: 10
Effective length of query: 463
Effective length of database: 863
Effective search space: 399569
Effective search space used: 399569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no352_f24.g1 MSMg01no352_f24.g1 CHROMAT_FILE:
MSMg01no352_f24.g1 PHD_FILE: MSMg01no352_f24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:44:54 2005
(315 letters)
>mm_chrX_160380928_160381642
Length = 715
Score = 586 bits (303), Expect = e-172
Identities = 309/311 (99%)
Strand = Plus / Plus
Query: 1 taggcttgagtcagggtcatagtcatccctccgacactgctccattccaaatgttgtaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taggcttgagtcagggtcatagtcatccctccgacactgctccattccaaatgttgtaaa 260
Query: 61 catgcccttaatcagcaaggtgggacttgatgtggggaagttgtgtttacgtgaacacct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catgcccttaatcagcaaggtgggacttgatgtggggaagttgtgtttacgtgaacacct 320
Query: 121 gcagaagaaagaaaagtgaactcatgtgtccaagaacaaaatcacacattaaaagcttac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcagaagaaagaaaagtgaactcatgtgtccaagaacaaaatcacacattaaaagcttac 380
Query: 181 cattaagttcaagagcaagactcaagtaacatgactgtttagccttaactacacagtaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cattaagttcaagagcaagactcaagtaacatgactgtttagccttaactacacagtaat 440
Query: 241 gaacattgctgataggctcagctacagcattcaagaaaaatgttgtaaaactggctgatt 300
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaacattgctgagaggctcagttacagcattcaagaaaaatgttgtaaaactggctgatt 500
Query: 301 tctcactgaaa 311
|||||||||||
Sbjct: 501 tctcactgaaa 511
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space: 216036
Effective search space used: 216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
