Query= MSMg01no352_k08.b1 MSMg01no352_k08.b1 CHROMAT_FILE:
MSMg01no352_k08.b1 PHD_FILE: MSMg01no352_k08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:45:16 2005
(350 letters)
>mm_chrX_110155383_110156134
Length = 752
Score = 491 bits (254), Expect = e-143
Identities = 326/358 (91%), Gaps = 18/358 (5%)
Strand = Plus / Minus
Query: 5 gaattctccatgtgcagctgctt-cctaacctggtcaggtttcagagatgtcaaagcttc 63
||||||||||||||||||||||| |||||||||| |||||||||| ||||| |||||| |
Sbjct: 362 gaattctccatgtgcagctgcttccctaacctggccaggtttcagcgatgttaaagctcc 303
Query: 64 cagcacagatttgtcagaaatgtaaaaatccaaggaatgtagctcttgctgacccttgaa 123
||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 cagcacagattcataagaaatgtaaaaatccaaggaatgtagctcttgctgacccttgaa 243
Query: 124 gaaggagttggattgagaaaatggg-aaaatttc--------ccaggctgttcctctcag 174
||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct: 242 gaaggagttggattgagaaaatgggaaaaatttcccagacttccaggctgttcctctcag 183
Query: 175 gttgcctgtacctccctcccactgtacagctctctcctctggggtatcc--ttccctttc 232
|||||||||| |||||| |||||||||||||||||||||||||||| | |||||
Sbjct: 182 gttgcctgta----cctcccgctgtacagctctctcctctggggtatccaat--cctttt 129
Query: 233 tataatgtcacacaaatcaggcacagaatcgctttataacctactttgtcacaaagcttc 292
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct: 128 tataatgtcacacaaatcagggacagaatcactttataacctactttgtcacaaagcttc 69
Query: 293 agctcttacgtcagctgttgtttccggaagcccacctatggcatgcactaaatgccaa 350
|||||||| |||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct: 68 agctcttatgtcagctgttgtttcctgaagcccacctagggcatgcactaaatgccaa 11
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 350
Length of database: 752
Length adjustment: 9
Effective length of query: 341
Effective length of database: 743
Effective search space: 253363
Effective search space used: 253363
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no352_k08.g1 MSMg01no352_k08.g1 CHROMAT_FILE:
MSMg01no352_k08.g1 PHD_FILE: MSMg01no352_k08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:45:16 2005
(324 letters)
>mm_chr13_17602983_17603706
Length = 724
Score = 619 bits (320), Expect = 0.0
Identities = 323/324 (99%)
Strand = Plus / Minus
Query: 1 agtatcagggttaaaacttgttacttgtcaacaccagtgcttaaattttggttcactttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 agtatcagggttaaaacttgttacttgtcaacaccagtgcttaaattttggttcactttg 656
Query: 61 gagacatctgggaccttcctgacactacagatgcctattccctatactcagagattgcgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 gagacatctgggaccttcctgacactacagatgcctattccctatactcagagattgcgt 596
Query: 121 tttagtgcatgacctgggcaccgaggttggactcttcccagatgattgtgatagacagca 180
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 595 tttagtgcatgacctgggcaccaaggttggactcttcccagatgattgtgatagacagca 536
Query: 181 aagtttgaggatggctttccccacagtgattcatactctgtgctacttgagaatgagtca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 aagtttgaggatggctttccccacagtgattcatactctgtgctacttgagaatgagtca 476
Query: 241 tctgggaatgcattaagaaagtagaattgtatgatttgtacaaagcagtattaggaggat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 tctgggaatgcattaagaaagtagaattgtatgatttgtacaaagcagtattaggaggat 416
Query: 301 tcaggaatctgcattttgagatgg 324
||||||||||||||||||||||||
Sbjct: 415 tcaggaatctgcattttgagatgg 392
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 724
Length adjustment: 9
Effective length of query: 315
Effective length of database: 715
Effective search space: 225225
Effective search space used: 225225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
