BAC Information

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BAC

Clone NameMSMg01-352O23
ChromosomeX (Build37)
Map Location 81,811,455 - 81,811,836
singlet/doubletsinglet
Overlap geneDmd
Upstream geneLOC100042306
Downstream geneLOC100042296, LOC669833, 1600014K23Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-352O23.T7 (MSMg01no352_o23.b1)MSMg01-352O23.TJ (MSMg01no352_o23.g1)
ACCAG463938AG463939
length780797
length of high quality
(start - end)		468 (48 - 515)382 (78 - 459)
definitionCHROMAT_FILE: MSMg01no352_o23.b1 PHD_FILE: MSMg01no352_o23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:45:39 2005CHROMAT_FILE: MSMg01no352_o23.g1 PHD_FILE: MSMg01no352_o23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:45:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NGGATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGAT
CCGCGGAATTCAAGAAGGTGTACCCCAGAAAATCAAATAACCCCATTAAA
AAATGGGGCTCAGAGCTAAACAAAAAATTTACACCTGAGGAAAACCAAAT
GTCTGAGAAGCACCTGAAAAAATGTTCAGCATCCTTAATCATCAGGAAAA
TGCAAATCAAATCAACCCTGAGTTTCCACATCACTCCAGTCAGAATGGCT
AAGAATTCATGTGACAGCAGATGCTGGCGAGGATGTGTAGAAAGAGGAAC
ACTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCTCTCTGGAAAT
CAGTCTGGTGGTTCCTCAAAAAAATTGGACATAGTACTACCGGAGGATCC
TGCAATACCTCTCCTGGGCATATATCCACAAGATGTTCCAACCCGTAAGA
AGGACACATGCTTCACTATGTTCATAGCAGCCTTATTTATAATAGCAGAA
GCTGGAAAGCACCTAGATGCCTGTCAACAGAGGAATGGATGCAGAAAATG
TGGTACATTTACACCATGGAGTACTATTCAGGGATTAAAAAGAATGAATT
TATAAAATTCCTAAGCCAATGGATGGACCTGGAAGGGATCTTCCTGAATG
AGGGAACTTCATCTCCAAAAAAACTCCCAGGAATTGTTTTCCCCTGGATA
TAAATTAACCCCGGGACTTTTTAAAACCCTCAAATATTGATACACTCTTC
GGAACCATTTAAGCTAGGGAAAGCAAAAAA

NNCCAATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXACCAGGGAGAGTATGTAAATTAA
GGTGAAATTAAAGAGAGACTCCCAATGAATAGCAATATTTAAGGGGTGGA
CAGAACAATCTGAGAAGTGGCCAAACTGTTAGAACAAAATGAAAGCATGA
TTCTGTTCTCTTAATCAGAAGAGAAGACTTAAGAAGGCATTTTCAGTGAT
GACACATAATGAAGGGCACTTTATGAAAATAAATACACAGTCTAGAGGCT
CCAAGGCTCTAGCAACTTGAAGGTTACTGCTATCATCTGCAAAAGCAATT
TCTGTGGCAAAAGTCAATTTGCATTGGGTGGGAACATCACCTGGGATATG
ATTGTGTGAATGCTGGGTGGAAACTAGTGCTTCTCAGACTTTAGCATGAA
TATTAAATCACCAGAAGAATCTCGGTTTAAATGGAAATTCTAGTTTAGAA
AATCGNAGAGAGAGCCTGAGTTTGATAAAAAATGCTGCTGTGGGCCCAGA
CATCTTTGCTTTCTCCATAATTTATATTTTTATTCATTTTACGNCCCGAA
CCCTGGCCATCCCCGCTTTCAATCACCCCCCACACCCCCCACCATTTATA
TCTTCCCCCCCCCCTTTCTCTTTCCCTTTAAAAAAGGGAAACCCTCGGCG
GGGTCCCCTCCACCCCCCCCAACAAAGGGCTGGGGTTGAAACCCGCGCCT
TGCCCCGAAACAAAAATTTTTTTTCACGTTTACAAAGAAATACAACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no352_o23.g1 MSMg01no352_o23.g1 CHROMAT_FILE:
MSMg01no352_o23.g1 PHD_FILE: MSMg01no352_o23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:45:39 2005
         (382 letters)



>mm_chrX_81811255_81812036
          Length = 782

 Score =  739 bits (382), Expect = 0.0
 Identities = 382/382 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   accagggagagtatgtaaattaaggtgaaattaaagagagactcccaatgaatagcaata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 accagggagagtatgtaaattaaggtgaaattaaagagagactcccaatgaatagcaata 260

                                                                       
Query: 61  tttaaggggtggacagaacaatctgagaagtggccaaactgttagaacaaaatgaaagca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttaaggggtggacagaacaatctgagaagtggccaaactgttagaacaaaatgaaagca 320

                                                                       
Query: 121 tgattctgttctcttaatcagaagagaagacttaagaaggcattttcagtgatgacacat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgattctgttctcttaatcagaagagaagacttaagaaggcattttcagtgatgacacat 380

                                                                       
Query: 181 aatgaagggcactttatgaaaataaatacacagtctagaggctccaaggctctagcaact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatgaagggcactttatgaaaataaatacacagtctagaggctccaaggctctagcaact 440

                                                                       
Query: 241 tgaaggttactgctatcatctgcaaaagcaatttctgtggcaaaagtcaatttgcattgg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgaaggttactgctatcatctgcaaaagcaatttctgtggcaaaagtcaatttgcattgg 500

                                                                       
Query: 301 gtgggaacatcacctgggatatgattgtgtgaatgctgggtggaaactagtgcttctcag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtgggaacatcacctgggatatgattgtgtgaatgctgggtggaaactagtgcttctcag 560

                                 
Query: 361 actttagcatgaatattaaatc 382
           ||||||||||||||||||||||
Sbjct: 561 actttagcatgaatattaaatc 582


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 382
Length of database: 782
Length adjustment: 9
Effective length of query: 373
Effective length of database: 773
Effective search space:   288329
Effective search space used:   288329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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