BAC Information

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BAC

Clone NameMSMg01-353L06
ChromosomeX (Build37)
Map Location 135,462,567 - 135,462,899
singlet/doubletsinglet
Overlap geneNrk
Upstream geneIl1rapl2, 1700025D03Rik
Downstream geneSerpina7, 4930513O06Rik, 4933428M09Rik, Mum1l1, LOC675062, Trap1a, C330013F16Rik, EG666359, D330045A20Rik, Rnf128, LOC622432, Tbc1d8b, Ripply1, Cldn2, Morc4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-353L06.T7 (MSMg01no353_l06.b1)MSMg01-353L06.TJ (MSMg01no353_l06.g1)
ACCAG464517AG464518
length773760
length of high quality
(start - end)
428 (54 - 481)341 (83 - 423)
definitionCHROMAT_FILE: MSMg01no353_l06.b1 PHD_FILE: MSMg01no353_l06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:46:39 2005CHROMAT_FILE: MSMg01no353_l06.g1 PHD_FILE: MSMg01no353_l06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:46:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TAACTTTCTCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTTTGTTTAGTTCTAAGGGAAATTGGTCTGAAGTTCTC
TATCTTTGTTGGATCTTTCTGTGGTTTAGGTATCAGAGTAATTGTGGCTT
CACAGAATGAGTTGGGTAGAGTACCTTCTACTTCTATTTTGTGGAATAGT
TTGTGCAGAACTGGAATTAGATCTTCTTTGAAGGTCTGGTAGAACTCTGC
ACTAAACCCATCTGGTCCTGGGCTTTTTTTGGCTGGGAGAGTATTAATGA
CTGCTTCCATTTCTTTGGGGGATATGGGACTCATTAGATTGTTAACTTGA
TCCTGATTTAACTTTCGTACCTGGTATCTGTCTAGAAATTTGTCCATTTC
GTCCAGGTTTTCTAGTTTTGTTGAATATAGCCTTTTTTCCCTTCCTTCCC
TTCCCTTCCCTTCCTTCCCTTCCCTTCCCTTACCTTATCTTTCCTTCCCT
ATACTTACCTTCCTTTTCCCTTCTTTTTCCTTCCTACTTTCTCCTTTACC
TCCTTCTTTTACCCCCCTTTTTCTCCTTCTTCCCTTTTCCCCCCTCCTTC
CCTTTATATTTCCCCCCCCCTCTTATCCCTTTCCCCCCCCCTTTTACCCC
CTCCCCCCTTTCCCTTATTTAAATCCCCCCATCGCCCTTCTTTCCTCCTT
TTCCCTCCCCTTCCCCACTTTACCCCCTCCCTTTACTTCCTTCTCCTTCT
CCCTCCCTCCCCTTTTTTTCCCN
TTTCTTTCAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTTTGTAGACCAGGCTG
GCCTCAAACTCAGAAATCTGCCTGCCTCTGCCTCCTGAGTTCTGGGACTA
AAGGCATGCACCACCACGCTCGGCTGGGATGCAATTTTTCTTGTCTTACT
TAACTGAGACCCACATTAGAGGAAGTAATGATGCTAAGAGGAAGGAAGAA
AAAGCGATAAATAAGAGTGGGCAAGAGGGGAGAAAATATTAATGGTATTT
ATTTATTTATTTATTTATTTATCTATCTAATTATTTATTTTGCTGGCTAT
AGAAATTATAATGAGTCAATGAAATTCTAAGAAGAGTGTTATTGTCACTA
AGAGAACAGAGCTAGAATATTTGTAGTGAGGATGGTGAAAAGAACCGGAA
TACTCTAAATAAAATGAGACCCTATCCACATTANCGTATAGCACTGAGTC
CTTATAGGCTTTGGCACAACAGATATCTTTCTACCTTGTTATCGCCACTT
CCCCAATTGAAACAGGACCTTGGTCTCTGCACCTTTATTCCCGTATGTCC
CCTTTTCCTTTACCCAACCTTACGTATCCTATTCCACTTTCGTACCAAAT
TCATCCCCTTTTCCCTTATTCCCCCTTTCCTTTCCCCTTTTCCGTTTTTT
TCCCTTCCCTTTCCCCCTTTTTTCCTCTTATTTCTCTTCCCTTTTTTCCC
CCTTCTCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no353_l06.g1 MSMg01no353_l06.g1 CHROMAT_FILE:
MSMg01no353_l06.g1 PHD_FILE: MSMg01no353_l06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:46:39 2005
         (341 letters)



>mm_chrX_135462367_135463107
          Length = 741

 Score =  617 bits (319), Expect = 0.0
 Identities = 332/341 (97%), Gaps = 8/341 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   actttgtagaccaggctggcctcaaactcagaaatctgcctgcctctgcctcctgagttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actttgtagaccaggctggcctcaaactcagaaatctgcctgcctctgcctcctgagttc 260

                                                                       
Query: 61  tgggactaaaggcatgcaccaccacgctcggctgggatgcaatttttcttgtcttactta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgggactaaaggcatgcaccaccacgctcggctgggatgcaatttttcttgtcttactta 320

                                                                       
Query: 121 actgagacccacattagaggaagtaatgatgctaagaggaaggaagaaaaagcgataaat 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 321 actgagacccacattagaggaagtaatgatgctaagaggaaggaagaaaaagggataaat 380

                                                                       
Query: 181 aagagtgggcaagaggggagaaaatattaatggtatttatttatttatttatttatttat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||        
Sbjct: 381 aagagtgggcaagaggggagaaaatattaatggtatttatttatttatttat-------- 432

                                                                       
Query: 241 ctatctaattatttattttgctggctatagaaattataatgagtcaatgaaattctaaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 ctatctaattatttattttgctggctatagaaattataatgagtcaatgaaattctaaga 492

                                                    
Query: 301 agagtgttattgtcactaagagaacagagctagaatatttg 341
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 agagtgttattgtcactaagagaacagagctagaatatttg 533


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 341
Length of database: 741
Length adjustment: 9
Effective length of query: 332
Effective length of database: 732
Effective search space:   243024
Effective search space used:   243024
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)