BAC Information

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BAC

Clone NameMSMg01-355E10
ChromosomeX (Build37)
Map Location 159,145,814 - 159,146,224
singlet/doubletsinglet
Overlap genenone
Upstream geneRai2, Gm47, Nhs, Reps2, LOC654358, LOC100041557, LOC667630
Downstream geneRbbp7, 4932441K18Rik, LOC671250, Syap1, LOC100041607, Ctps2, S100g, LOC100040610, EG637051, Grpr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-355E10.T7 (MSMg01no355_e10.b1)MSMg01-355E10.TJ (MSMg01no355_e10.g1)
ACCAG465702AG465703
length766789
length of high quality
(start - end)
515 (43 - 557)411 (74 - 484)
definitionCHROMAT_FILE: MSMg01no355_e10.b1 PHD_FILE: MSMg01no355_e10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:48:41 2005CHROMAT_FILE: MSMg01no355_e10.g1 PHD_FILE: MSMg01no355_e10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:48:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCACTCTGTACACCAGGCTGGCCTCGAACTCAGAAATCCACCTGTCTCTG
CCTCCCAAGTGCTGGGATTAAAGGCATGTGCCACCACTGCCCGACTCAGC
CTAGCCTTTTCATTCCCCCTGAAATGGTTGGCCCAGGGAGTGGCACTATT
AAAATGTGTGGATCTGTTGGAGTAGGTGTGTCACTGTGGGCATGGGCTTA
AGACCCTCATCCTAGCTCCCTGGAAGCCAGTATTCTACCAGCAGCCTTCA
GATGAAGATGTAGAACTCTCAGCTCCTCCTGTACCATGCCTGCCTGGACA
CTGCCATGCTCCTACCTTGATAATTGACTGAACCTCTGAACCTATAAGCC
AGCCCCAATTAAATGTTCTTTTTAAGACTTGCTTTGGTCATGGTGTCTGT
TCACAGCAGTAAAACGCTAACCAAGACACCCCCCTTTCAGTAATGGGCCA
TTTCAAATCCTTAAGATGTTACTGAGGCCTCTACACTAGCAGCTCCAGCC
AGCCCTATGTCAAGGAGAGAACATAGCAACACCGACGAAATGGCCACCCT
TTTGATCTGATTGTTTGCAAGCTCTAGCTACTTGATGACATTGTCCCCCG
AGTAATAAGTCCTTCTTATCTACTAACCATGCCCCTAATTGCCTGGTGTA
AAGCCCCCCACGCATTTACTCCCCTGTATACTCTTTGTTTTGTCACCATG
TATATCTCGCACCCCT
TGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTAAATTTGAGGTCAGCCTGAAATACAT
AATGAGATCTTGTCTCAAAGAAAAACCAGCCAGGCAGTGGTGGTGCACGC
CTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCGGATTTCTCAGTTTGA
GGCCAGCCTGGGCTACAAAGTGAGCTCCAGGACAGCCAGGGCTACACAGA
GAAACCCTGTCTCGAGAAAACCAGAAACAAAATCAAAGAAAAATCAGAAA
GGGGTGTGGGAAAGCCTGGTGTCTAAGTAGAGTGCTTTGCTAGCATGCAT
GCTGGAAGCATAGCTCACTTGGTAAAGCACAAAGCTCCGGGTTCAATCCC
CAGCAGTCTGGCTGTGGCAGACCATGCCTATAACCCCAGCACTCGGCAGG
ATGATCAGAAGTCTAAATGGGGACTGGGGAGATGGCTCAGTCAGTAAAGT
GCTTGTTGCCCAAACCTGAGGACCTTATTTTTGATCCTCAGTATCTACCT
AAAAACCAGACAGTCCTAAGGAAAGTGGTAGCACACTCCCATAATCCCAG
CACTCAGGAGTGATCAGGGAGGCCAACCCTTTCGAATTGGCAGGTCAGTC
TGGGTCCATCGAGGGAATGTCCTGGATCACCCTCGTCTATTCACAATAAC
CCCTGCTTATTATTATAATTTTTTACTCATCACTCTCTCCTCATATAACT
TAAAATTTCTTGTCTTCCTTGCTTGTTTTTCTTTTTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no355_e10.g1 MSMg01no355_e10.g1 CHROMAT_FILE:
MSMg01no355_e10.g1 PHD_FILE: MSMg01no355_e10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:48:41 2005
         (411 letters)



>mm_chrX_159145614_159146424
          Length = 811

 Score =  779 bits (403), Expect = 0.0
 Identities = 409/411 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   taaatttgaggtcagcctgaaatacataatgagatcttgtctcaaagaaaaaccagccag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taaatttgaggtcagcctgaaatacataatgagatcttgtctcaaagaaaaaccagccag 260

                                                                       
Query: 61  gcagtggtggtgcacgcctttaatcccagcacttgggaggcagaggcaggcggatttctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcagtggtggtgcacgcctttaatcccagcacttgggaggcagaggcaggcggatttctc 320

                                                                       
Query: 121 agtttgaggccagcctgggctacaaagtgagctccaggacagccagggctacacagagaa 180
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 321 agtttgaggccagcctgggctacaaagtgatctccaggacagccagggctacacagagaa 380

                                                                       
Query: 181 accctgtctcgagaaaaccagaaacaaaatcaaagaaaaatcagaaaggggtgtgggaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 accctgtctcgagaaaaccagaaacaaaatcaaagaaaaatcagaaaggggtgtgggaaa 440

                                                                       
Query: 241 gcctggtgtctaagtagagtgctttgctagcatgcatgctggaagcatagctcacttggt 300
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcctggggtctaagtagagtgctttgctagcatgcatgctggaagcatagctcacttggt 500

                                                                       
Query: 301 aaagcacaaagctccgggttcaatccccagcagtctggctgtggcagaccatgcctataa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaagcacaaagctccgggttcaatccccagcagtctggctgtggcagaccatgcctataa 560

                                                              
Query: 361 ccccagcactcggcaggatgatcagaagtctaaatggggactggggagatg 411
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccccagcactcggcaggatgatcagaagtctaaatggggactggggagatg 611


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 411
Length of database: 811
Length adjustment: 9
Effective length of query: 402
Effective length of database: 802
Effective search space:   322404
Effective search space used:   322404
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)