BAC Information

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BAC

Clone NameMSMg01-355E21
ChromosomeX (Build37)
Map Location 125,360,336 - 125,360,685
singlet/doubletsinglet
Overlap geneLOC100040550
Upstream geneLOC385523, LOC100040516, Mdm4-ps, EG237030, LOC100040538
Downstream geneLOC100040562, LOC100040570, LOC669120, Diap2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-355E21.T7 (MSMg01no355_e21.b1)MSMg01-355E21.TJ (MSMg01no355_e21.g1)
ACCAG465724AG465725
length766763
length of high quality
(start - end)		561 (49 - 609)443 (79 - 521)
definitionCHROMAT_FILE: MSMg01no355_e21.b1 PHD_FILE: MSMg01no355_e21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:48:43 2005CHROMAT_FILE: MSMg01no355_e21.g1 PHD_FILE: MSMg01no355_e21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:48:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTTAGTATCAATTGGGAGTTGTGTCACTGGGGATGGGCTTTG
AGGTTTCAAAAGCTCATGGTATTACCACTAAATGTTCTCTGCCCTTTTTT
TGTGGAACAAGAGGTAAGCTCTCAGCTCTTCACAGAGCATCACGGCTGCC
TGACTACTGCCCTGCTCCCTACCATGATGGTCACTCATTCTAAGCCTCTG
AAATTGTAAGTCCTACTTATAAGTTGTTTTGGTCATGGGTGGCTTATCAC
AGTGATAGAAAAGTAACTAGGATGGGTGAATATTTTAAAGTTGTAGATTT
GGGGGCCAGAGTGATGGCTCTACAATTAAACCAGTTTCTATTTCTAGCAC
GCATATCTGATGATTTACAACCACCTTTAACTCCAGTTATTGAGATGTGA
TGCACCTCTCTCGCTATAAAACTTGTCTCCGAAATTTCTACATAGTTGAC
TGGAAGTAAATTAATTTTCTGCTCCTAATAGAATTTCATTTAATATTCAA
ATCTTTTTTATTGAGTTACAAAAACTTTTTTCTCATTATAGAATTATATT
ATACCATTTATTTATTATCTTCTGCCCTCCCAGTGATATGTTAATTTCCT
AGGGATGCCATATTAAAGTATCCCAAACTGCCTTTCAACAAATAAAAATT
TCTGAGGGTTAAATTATAAAAAAAAAACCAAATGGCCACACAATGTTGGG
CCTTTATCCCCTTGTG

NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTCAGTTCTGAGCCCCAT
TTTTTAATGGGGTTATTTGATTTTCTGAAGTCCACCTTACCATGCAGTTT
TTATCACAATTGCTCTGTAGTAAAGCTTTAGGTCAGGCATGGTGATTCCA
CCAGAGGTTCTTTTATCCTTGAGAAGAGTTTTTGCTATCCTAGGTTTTTT
GTTATTCCAGATGAATTTTCAGATAGCCCTTTTTAATTCGTTGAAGAATT
GAGTTGGAATTTTGATGGGGATTGCATTGAATCTGTAGATTGCTTTTGGC
AAGATAGCCATTTTTACTATATTGATCCTGCCAATTCATGAGCATGGGAG
ATCTTTCTATCTTCTGAGATCTTCTTTAATTTCTTTCTTCCAATTTGCTA
AACACATGAAACTCAAGAAGAATGAAGACCAAGTGTGGTCACTTTGCTCC
TTCTTAGAATTGGGAACAAAACACCCATAGAAGGAATTACAGAGATAAAG
TTTGGAGCTGAGATGAAAGGATGGACCTTCTAAAGACTGCCCTATTCCGG
GAATCCATCCCATAATCAACTTTCCAATGGTGGACCAAATGGTTATTCTT
ACCAGGGTTTTTTCTTAATGGACCCCATAAAACTATCTCTTTGGGAAAAA
TTTCCGGCCCTCTTCAAAAAAAAAAGGGTGGCCCTTGTCCCTTTTGTTGG
ATATCTAAGCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no355_e21.b1 MSMg01no355_e21.b1 CHROMAT_FILE:
MSMg01no355_e21.b1 PHD_FILE: MSMg01no355_e21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:48:43 2005
         (561 letters)



>mm_chrX_125359725_125360685
          Length = 961

 Score =  661 bits (342), Expect = 0.0
 Identities = 349/352 (99%), Gaps = 2/352 (0%)
 Strand = Plus / Minus

                                                                       
Query: 210 aagtcctacttataagttgttttggtcatgggtggcttatcacagtgatagaaaagtaac 269
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961 aagtcctacttataagttgttttggtcatgggtggcttatcacagtgatagaaaagtaac 902

                                                                       
Query: 270 taggatgggtgaatattttaaagttgtagatttgggggccagagtgatggctctacaatt 329
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 taggatgggtgaatattttaaagttgtagatttgggggccagagtgatggctctacaatt 842

                                                                       
Query: 330 aaaccagtttctatttctagcacgcatatctgatgatttacaaccacctttaactccagt 389
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 841 aaaccagtttctatttctagcactcatatctgatgatttacaaccacctttaactccagt 782

                                                                       
Query: 390 tattgagatgtgatgcacctctctcgctataaaacttgtctccgaaatttctacatagtt 449
           ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tattgagatgtgatgcac--ctctcgctataaaacttgtctccgaaatttctacatagtt 724

                                                                       
Query: 450 gactggaagtaaattaattttctgctcctaatagaatttcatttaatattcaaatctttt 509
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 gactggaagtaaattaattttctgctcctaatagaatttcatttaatattcaaatctttt 664

                                                               
Query: 510 ttattgagttacaaaaacttttttctcattatagaattatattataccattt 561
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 ttattgagttacaaaaacttttttctcattatagaattatattataccattt 612


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 961
Length adjustment: 10
Effective length of query: 551
Effective length of database: 951
Effective search space:   524001
Effective search space used:   524001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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