BAC Information

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BAC

Clone NameMSMg01-355O22
ChromosomeX (Build37)
Map Location 91,987,409 - 91,987,732
singlet/doubletsinglet
Overlap genenone
Upstream genePcyt1b, Pdk3, EG668103, LOC100042041, AU015836, EG245516, LOC100042062, EG629591, Zfx, Eif2s3x, Klhl15, LOC385495, LOC670263, LOC100042098, LOC631145, 0610008C08Rik, EG668148, Maged1, LOC668150, EG385499, EG668156, Gspt2, LOC385500, Zxdb
Downstream geneLOC631331, EG631319, Zxda, Gm371, 9630042H07Rik, Arhgef9, LOC619688, LOC100042189, 2810002O09Rik, Asb12, LOC668202, AK129302, A130028J20Rik, 1700010D01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-355O22.T7 (MSMg01no355_o22.b1)MSMg01-355O22.TJ (MSMg01no355_o22.g1)
ACCAG466198AG466199
length775782
length of high quality
(start - end)
---324 (197 - 520)
definitionCHROMAT_FILE: MSMg01no355_o22.b1 PHD_FILE: MSMg01no355_o22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:49:31 2005CHROMAT_FILE: MSMg01no355_o22.g1 PHD_FILE: MSMg01no355_o22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:49:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTCTGTGTACACATGGCATCTCTTATGTATACTATCATATCAT
CTCAAATATATCATTTTGACTTCTTCCTTCCAATCTGTATCCCCTTGATC
TCCTTCACTTGTCTTAATGCTCTAGCTACAACTTCAAGTGCTATATTGAA
TAAAAATGGAAAGAGTGCATAGACCTGTCTTGTTTCTGATTTTACTGGAA
TTGATTTGAGTTTCTCTCCATTTAATTTGATGTTGCCTATAGGTTTACTG
TACATTGTCTTTGATATGCTGAGGTATGCTTTGAATCTCTGATTTTTCTA
ATACCTTTATCATGAAGAACTGATATATTTTGTTAAAGATGTACAGCTGA
TTATGGAGAGATATGGCACGAGTGTTTCTTAATATAATCAGGCATGAAAA
AATAAATAAAAAAAAAGCCAGTCACAACGCCTTGTATGAAATGGTGAGGA
CCCACCGACACTGGTGGAGTGAAATTGGCTAGTGACTGTTAATAAAAAAA
GTCAGCTTTTCTTCCTCTGAAATGTATCAATTCCGAAACACATTGTGGCT
GCTTTCCACTACTGTTTACACACTACTAGGTTCCTCGCTTTTTTAACTCT
TTTCCTACGTATCTCTATTTTGTTTCCCCCTTTTTACCTTCTAACACTCC
TTATATATCCCCTGCCCTCCCCTTACTAATCCTTTTTTTACTTTTTTTCC
TTCCCATTTTTTTTCGTCCCCCCCC
NCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTATACACAGATGAGAAATATA
GGCACAAACGCAAGTGCTCAGGGTAAGAATAAAGTTTAAGAACAAATAGA
TAACAAGCCAAAACAAGAAAAGAATCTGAGATATTCAACACAGCGAACAA
GTTCCTAAAATTAAAAAAATTCAAAAGAGAAATAAAATATTTGAGCCATG
AAAACAATGAACAATACTACCAGAATCAGTGACTATGTCTTGGTAATAAC
CCCCAAAGTTTATTATGTCAGTTTTCCAATTAAAAGATACATACTAGCTG
GCTGGATTGAAAGGCAAGTTACAGTTGTTTCTGGTCTGCAAGAGACACAG
CAAATTGACAAAAGCACAGAAATAAAGTAAAAACATAGTAAGAGACAGAA
TAAGCATGCATAAGAAGAAAACCAGGACAGCGACAGACAGGTAGATCAAT
GGAATAGAATTGAAGACCCAGAAATGAACCCACACACCTGTAGTCACTTG
ATCTTTGACAGGGGAGCTAAAACCATCCAGTGGAAAAAGGACAGCATTTT
TCACAAATGGTGCTGGCACAAAGGGCAGGTATTCTGTAAAAGAATGCAAA
TTGATCCATTCTTATCTCCTTGTACAAAGCTCAAGCCTAAATGGGACCAA
AAACCTCTCCCCTAAACCCCAAACCCTGGAAATTTTTTAAGGGAAAAAGG
GGGGAAACCCCTCCAAAAAATTGGGCTCCGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no355_o22.g1 MSMg01no355_o22.g1 CHROMAT_FILE:
MSMg01no355_o22.g1 PHD_FILE: MSMg01no355_o22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:31 2005
         (324 letters)



>mm_chrX_91987405_91988128
          Length = 724

 Score =  619 bits (320), Expect = 0.0
 Identities = 323/324 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   acaagttcctaaaattaaaaaaattcaaaagagaaataaaatatttgagccatgaaaaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 acaagttcctaaaattaaaaaaattcaaaagagaaataaaatatttgagccatgaaaaca 269

                                                                       
Query: 61  atgaacaatactaccagaatcagtgactatgtcttggtaataacccccaaagtttattat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 atgaacaatactaccagaatcagtgactatgtcttggtaataacccccaaagtttattat 209

                                                                       
Query: 121 gtcagttttccaattaaaagatacatactagctggctggattgaaaggcaagttacagtt 180
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 208 gtcagttttccaattaaaagatacatactagctgactggattgaaaggcaagttacagtt 149

                                                                       
Query: 181 gtttctggtctgcaagagacacagcaaattgacaaaagcacagaaataaagtaaaaacat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148 gtttctggtctgcaagagacacagcaaattgacaaaagcacagaaataaagtaaaaacat 89

                                                                       
Query: 241 agtaagagacagaataagcatgcataagaagaaaaccaggacagcgacagacaggtagat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88  agtaagagacagaataagcatgcataagaagaaaaccaggacagcgacagacaggtagat 29

                                   
Query: 301 caatggaatagaattgaagaccca 324
           ||||||||||||||||||||||||
Sbjct: 28  caatggaatagaattgaagaccca 5


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 724
Length adjustment: 9
Effective length of query: 315
Effective length of database: 715
Effective search space:   225225
Effective search space used:   225225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)