BAC Information

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BAC

Clone NameMSMg01-356I17
ChromosomeX (Build37)
Map Location 137,175,409 - 137,175,815
singlet/doubletsinglet
Overlap genenone
Upstream geneRnf128, LOC622432, Tbc1d8b, Ripply1, Cldn2, Morc4, Rbm41, Gm719, E230019M04Rik, LOC622213, LOC100041446, EG245643, LOC666424, Prps1, Tsc22d3
Downstream geneMid2, LOC619612, Tex13, LOC632685, Vsig1, Psmd10, Atg4a, LOC100038961, Col4a6, Col4a5, Irs4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-356I17.T7 (MSMg01no356_i17.b1)MSMg01-356I17.TJ (MSMg01no356_i17.g1)
ACCAG466661AG466662
length757792
length of high quality
(start - end)		552 (38 - 589)409 (69 - 477)
definitionCHROMAT_FILE: MSMg01no356_i17.b1 PHD_FILE: MSMg01no356_i17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:50:18 2005CHROMAT_FILE: MSMg01no356_i17.g1 PHD_FILE: MSMg01no356_i17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:50:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAG
CATTTATAGGCTGAAGAACAAGGATTATGAGTTCAAGGTTGAGGCCATTC
TGGGATATGTAGGACCTTGTCTCAAAAGTACACAAGAATATAGGTGCAGA
TGCTATGCAAATGCCATGTCATCTTATATAAGGAACTAAGCAACAATGGA
TTTTAGTATCTGCAACAGAGTCCTGAAACCAATCCCCTATAGCTAATGAG
AACCAACTATATCTGCTTTCAATGACCCCTATCCATCCTTTTCTGTCCCT
CTTCCTATATTCCAGACTTTGACAACCCTTGTCTGTAAAGGGTCAGATAG
CAATTTTTTTTTGCCTTTGGTTGATAGAGCAAATGTATCTCTGTAGCATC
CAGTCAGCCTTGCTGTTTTAGCATGAAAACAGCTACAATGTATTAATAAA
TGGGTGTTGCAATGTGCTAGTAACTAATTAAAGACACAAACAAAAAATTG
AATTTCACAGAATTTTCATGTGTCAAAAATCTGGTTCTTTTAACTTCTTT
CCAACCTCTTAAAAATGTTTTGAAATCTTATTTTTAGCCATTGGGACATA
TGAAACAGGTGATGGGCCATATTTGGCCCATGGGCCATAGTGTGCCAACC
TCTGGTCTGGCTCTTTGCCTCTACATATACATACTTCCCGAGTCCCCCAG
CCCAGTTTCCTTGATTGTTCTACTGCCCCCTAACTACCCAGCACCTGTAT
TGTATAG

AGTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAGAAATCCGCCTGCCTCTGCCTCCCAAGTGCT
GGGATTAAAGGCGTGTGCCACCACTGCCCAGCTTCTTATTTGATTTTATA
CTTTCACTACGGAATATATTTTTTACCCAGTTATCCACCACCAGTCCTGA
AAAGCACATGACAGAATTAGGACAAGAAAAACAATTAGCTTTCTACCATC
TCTCACGTGTAGAATCTAGCCATATATAGAGAACAAGCAAGGCTAACGAT
TACGGGGTAAGGAAGAAGTAGATGCAGGTCATGGGCATGAGTTCTAAAAG
GGGACATGCTTTATTGTTTAAAGTTGATGTGGCAGGATTTTCTGTTTCAT
CAGCACTCTGATAGTAAACCTCTTACATTTCACCTTTAATTGTACCCTTC
TGTTTTTGTTTCATTTTTGAGACAGAGTTTCAAGTTACCCCAGCTAGCCT
TGAACTGACATTATCGTCAGAGATGACCCTGAACTACATGTTCCTCTTGC
TTCTACTTCCCAAGCCTGAAAAATTTTATTCTTGGCTACCAGAAATTAAA
AAAACTTTTTAGGCCCCTTGACCTTTTATCTGGGAACCTTTGAATGAATT
ATCTTTCTTAATCCTTTTTCCCAAGTTGGGGCACCCGTAGACCTTGTCTC
CTTACACATAATCCTCTTTTTTCCGATCGCCACAAATATTGCCAACCTCC
TGCCTTCCTTATTACTTCGGTCCCTCCGTTGTTCTCCTCTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no356_i17.g1 MSMg01no356_i17.g1 CHROMAT_FILE:
MSMg01no356_i17.g1 PHD_FILE: MSMg01no356_i17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:50:18 2005
         (409 letters)



>mm_chrX_137175144_137175952
          Length = 809

 Score =  710 bits (367), Expect = 0.0
 Identities = 398/409 (97%), Gaps = 2/409 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaaatccgcctgcctctgcctcccaagtgctgggattaaaggcgtgtgccaccactgcc 60
           ||||||| ||||||  ||||||||||||||||| |||||||||| ||| |||||||||||
Sbjct: 672 agaaatctgcctgc--ctgcctcccaagtgctgagattaaaggcatgttccaccactgcc 615

                                                                       
Query: 61  cagcttcttatttgattttatactttcactacggaatatattttttacccagttatccac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 cagcttcttatttgattttatactttcactacggaatatattttttacccagttatccac 555

                                                                       
Query: 121 caccagtcctgaaaagcacatgacagaattaggacaagaaaaacaattagctttctacca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 caccagtcctgaaaagcacatgacagaattaggacaagaaaaacaattagctttctacca 495

                                                                       
Query: 181 tctctcacgtgtagaatctagccatatatagagaacaagcaaggctaacgattacggggt 240
           |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 494 tctctcacgtgtagaatctagccatatatagagaacaagcaaggctaatgattagggggt 435

                                                                       
Query: 241 aaggaagaagtagatgcaggtcatgggcatgagttctaaaaggggacatgctttattgtt 300
           | ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 434 acggaagaagtggatgcaggtcatgggcatgagttctaaaaggggacgtgctttattgtt 375

                                                                       
Query: 301 taaagttgatgtggcaggattttctgtttcatcagcactctgatagtaaacctcttacat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 taaagttgatgtggcaggattttctgtttcatcagcactctgatagtaaacctcttacat 315

                                                            
Query: 361 ttcacctttaattgtacccttctgtttttgtttcatttttgagacagag 409
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 ttcacctttaattgtacccttctgtttttgtttcatttttgagacagag 266


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 409
Length of database: 809
Length adjustment: 9
Effective length of query: 400
Effective length of database: 800
Effective search space:   320000
Effective search space used:   320000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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