BAC Information

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BAC

Clone NameMSMg01-357I16
ChromosomeX (Build37)
Map Location 159,870,892 - 159,871,266
singlet/doubletsinglet
Overlap genenone
Upstream geneReps2, LOC654358, LOC100041557, LOC667630, Rbbp7, 4932441K18Rik, LOC671250, Syap1, LOC100041607, Ctps2, S100g, LOC100040610
Downstream geneEG637051, Grpr, 1700045I19Rik, Ap1s2, Zrsr2, Car5b, Siah1b, Tmem27, Ace2, Bmx, Pir, Figf, Piga
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-357I16.T7 (MSMg01no357_i16.b1)MSMg01-357I16.TJ (MSMg01no357_i16.g1)
ACCAG467417AG467418
length763782
length of high quality
(start - end)		541 (42 - 582)505 (72 - 576)
definitionCHROMAT_FILE: MSMg01no357_i16.b1 PHD_FILE: MSMg01no357_i16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:51:34 2005CHROMAT_FILE: MSMg01no357_i16.g1 PHD_FILE: MSMg01no357_i16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:51:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTTTGTACTTTTTGGATATTAGCCCTGTATCAGATGTAGGATTAGTAAAG
ATCTTTTCCCAATTTGTTGATTGCCATTTTGTCCTATTGACAGTGCCCTT
TGCCTTACAGAAGCTTTGCAATTTTATGAGGTTCCATTTGTCTATAGTTG
ATCTTAGAGCATAAGCCACTGGTGGTCTGTTCGGGAAATTTCCCTTGTGC
CCATGTATTTGAGGCTCTTCCCCACTTTCTCTTCTATTAGTTTCAGTGTT
TCTGGTTTTATGAGGAGGTCCTTGATCCACTTGGATTTGAGTTTTGTACA
AGGAGATAAGATTGGATTGATTTGCATTCTTCTACATGCTGACTGCCAGT
TGAACCAGCATCATTTGTTGAAAATGCTGTCTTTTTTTCCACTGGGTGGC
TTTAGCTCCTTTGCCAAAAATCAAGTAACCATAGGTGTGTGGGTTCATTT
CTGGGTCTTCCATTCCATTCCATTTATCTACCTGCCTGTCTCTGTACTAA
TACCATAGAGTTTTTAATAAATTTTATTATTTGTATGCGTCCATGATATG
TATGTGCTCGCACGTGCATGTACATATCTTTGGAAGTGAGAGGGGAAATT
TTTAGAATTGATTCTCTCTGTCCCCACTTTGGCCCGCTCCAGAGATTGTC
TCTCGCTCATCCTCCTTTTTGTGGGACGAAACTCTTTTCCCTATTACATT
TGCTCCCTATTGG

ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCAAAACAGCCCAGGATCACGGGCAGAAAC
AAACAACAAGTTCTTCCAGCTCTATTAAGCAAGGAAAGAATAAGCCTGGT
TCTTTGGATTGCTGAGTTGTCATTAAGAATTTCATACATACACACAACAA
GTTTTGAACAAATCCACCCTCCACCTCTCCCCATCACTTCTCCCTCCCAG
CTTCATGTATTCTTTTTACATGCACGGGGTCTACTTGGTGCTGTCACTAT
GTGCCTAGAACCGCCCACTGGAGTATGGAAAGCCTCTTAGAGGTCACATC
CCTGAAGCAAACCTTTCCCCAAAAGCCATCCATTGCCACTAACCCCCAGC
TTTCCTGAAATTTAAACAATCTCCTTGCAATTCTATACAACAAAAGTCTT
TGTCTTCTCAGTAAAATTCTCGATCTTATTTCATAGGATGAACCTAGTCA
TTTTATCAAAACCAGGCAGAAGGGCAGCCACATGGAACCTATCAGNCTTC
TTGCTCCCTTTCTGTACTTCCTATTCTCAGAACTCAGAAACTCTTTCTTT
GTTCCATGTGTCTAGACCTCTGATTCTTATGTTGACTCCATTTTCAGTTA
AAAAAAAGNTACTTGATCCTATTTTACCAAAAAACCTTTATAATTGGATC
CCGGGCCAAGTTCCCTTCAGAACCTATGCAAATGAAAAAAAAAGGGTAAT
TGGTTGGATCCGCTCCATAAGCTAGCTCCCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no357_i16.g1 MSMg01no357_i16.g1 CHROMAT_FILE:
MSMg01no357_i16.g1 PHD_FILE: MSMg01no357_i16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:34 2005
         (505 letters)



>mm_chrX_159870362_159871266
          Length = 905

 Score =  719 bits (372), Expect = 0.0
 Identities = 374/375 (99%)
 Strand = Plus / Minus

                                                                       
Query: 131 ttttgaacaaatccaccctccacctctccccatcacttctccctcccagcttcatgtatt 190
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 905 ttttgaacaaatccaccctccacctctccccatcacttctccctcccagcttcatgtatt 846

                                                                       
Query: 191 ctttttacatgcacggggtctacttggtgctgtcactatgtgcctagaaccgcccactgg 250
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 845 ctttttacatgcacggggtctacttggtgctgtcactatgtgcctagaaccgcccactgg 786

                                                                       
Query: 251 agtatggaaagcctcttagaggtcacatccctgaagcaaacctttccccaaaagccatcc 310
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 agtatggaaagcctcttagaggtcacatccctgaagcaaacctttccccaaaagccatcc 726

                                                                       
Query: 311 attgccactaacccccagctttcctgaaatttaaacaatctccttgcaattctatacaac 370
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 attgccactaacccccagctttcctgaaatttaaacaatctccttgcaattctatacaac 666

                                                                       
Query: 371 aaaagtctttgtcttctcagtaaaattctcgatcttatttcataggatgaacctagtcat 430
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 aaaagtctttgtcttctcagtaaaattctcgatcttatttcataggatgaacctagtcat 606

                                                                       
Query: 431 tttatcaaaaccaggcagaagggcagccacatggaacctatcagncttcttgctcccttt 490
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 605 tttatcaaaaccaggcagaagggcagccacatggaacctatcagccttcttgctcccttt 546

                          
Query: 491 ctgtacttcctattc 505
           |||||||||||||||
Sbjct: 545 ctgtacttcctattc 531


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 905
Length adjustment: 10
Effective length of query: 495
Effective length of database: 895
Effective search space:   443025
Effective search space used:   443025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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