Query= MSMg01no357_o23.b1 MSMg01no357_o23.b1 CHROMAT_FILE:
MSMg01no357_o23.b1 PHD_FILE: MSMg01no357_o23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:52:04 2005
(524 letters)
>mm_chrX_17320071_17320991
Length = 921
Score = 951 bits (492), Expect = 0.0
Identities = 513/520 (98%), Gaps = 3/520 (0%)
Strand = Plus / Minus
Query: 5 gaattccacacatgtgccaccatgcctagctctagttttgtttctttcctctctcttatt 64
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 gaattccacacgtgtgctaccatgcctagctctagttttgtttctttcctctctcttatt 662
Query: 65 tgtttttgttgttttctccattaatttacatactcagtgaagctttttttttctgtcatg 124
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 661 tgtttttgttgttttctccattaatttacatactcagtgaagc-ttttttttctgtcatg 603
Query: 125 caacccacataaagagttgatactttatatggaagacagactaggaaacaaaataacaag 184
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 caacccacataaagagtt-atactttatatggaagacagactaggaaacaaaataacaag 544
Query: 185 ttatttaatggaagtgtgaatggagtcttgctaggagctgaagccaggacattgacaaaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 ttatttaatggaagtgtgaatggagtcttgctaggagctgaagccaggacattgacaaaa 484
Query: 245 ccctcccacactggtcttttcatcacagttcgcctccatagaaattcccatctaattggc 304
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 ccctcccacactggtc-tttcatcacagttcgcctccatagaaattcccatctaattggc 425
Query: 305 ctacattcattctttcctctttgttaccattaatctagattctacaaagttgttgggaat 364
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 ctatattcattctttcctctttgttaccattaatctagattctacaaagttgttgggaat 365
Query: 365 cctttaaaatgagaagcagaacttggaatgctcctttacatgcccctcagtgatacccat 424
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 364 cctttaaaatgagaagcagaacttgcaatgctcctttacatgcccctcagtgatacccat 305
Query: 425 tttctcccccactctaccatcatctaagaaagccctaataggcactccacaatctgtctc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 tttctcccccactctaccatcatctaagaaagccctaataggcactccacaatctgtctc 245
Query: 485 ctgttcttaccctttctagcctcttctcccccacttgctg 524
||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 ctgttcttaccctttctagcctcttctcccccacttgctg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 5
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 524
Length of database: 921
Length adjustment: 10
Effective length of query: 514
Effective length of database: 911
Effective search space: 468254
Effective search space used: 468254
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no357_o23.g1 MSMg01no357_o23.g1 CHROMAT_FILE:
MSMg01no357_o23.g1 PHD_FILE: MSMg01no357_o23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:52:04 2005
(445 letters)
>mm_chrX_17110944_17111786
Length = 843
Score = 841 bits (435), Expect = 0.0
Identities = 442/445 (99%), Gaps = 2/445 (0%)
Strand = Plus / Plus
Query: 1 tttgtttagctctgagccccatcttttaagagggttatttgattttctggagtccaccct 60
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 201 tttgtttagctctgagccccatcttttaagggggttatttgattttctggagtccaccct 260
Query: 61 cttgagttctttatatatattggatattagtcccctagtttcccttagaatttatctgtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttgagttctttatatatattggatattagtcccctagtttcccttagaatttatctgtt 320
Query: 121 gagtcatgtaattatttgaagaaatcatataatgttgaaaatcttgtatttgaaggttgc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagtcatgtaattatttgaagaaatcatataatgttgaaaatcttgtatttgaaggttgc 380
Query: 181 tgatttcatcctgtggtgtggtaacacatttaagaattaacataataaagtgttggtttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgatttcatcctgtggtgtggtaacacatttaagaattaacataataaagtgttggtttt 440
Query: 241 ttttttaaaccacaacactggattgagaatgaggttctgtagtaaaacacttaagtatca 300
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttt--aaaccacaacactggattgagaatgaggttctgtagtaaaacacttaagtatca 498
Query: 301 tgagtgagcccccaggtttgatctccagcagcactgacaacataacaacagcaacaaatc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 tgagtgagcccccaggtttgatctccagcagcactgacaacataacaacagcaacaaatc 558
Query: 361 cttagtgttagaaaacaaaggtgccattagcagaccaaaacattttgtaatttggaattt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 cttagtgttagaaaacaaaggtgccattagcagaccaaaacattttgtaatttggaattt 618
Query: 421 gaaagtaggtgggataagttggaag 445
|||||||||||||||||||||||||
Sbjct: 619 gaaagtaggtgggataagttggaag 643
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 445
Length of database: 843
Length adjustment: 10
Effective length of query: 435
Effective length of database: 833
Effective search space: 362355
Effective search space used: 362355
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
