BAC Information

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BAC

Clone NameMSMg01-358N14
ChromosomeX (Build37)
Map Location 4,118,715 - 4,119,018
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668957, LOC100043932, OTTMUSG00000016406, LOC673743, OTTMUSG00000016405, OTTMUSG00000016411, LOC668961, LOC100042159, LOC100042168, LOC627187, LOC100042185, OTTMUSG00000016407, OTTMUSG00000016437, OTTMUSG00000016420, LOC547057
Downstream geneEG546327, EG668965, LOC546185, LOC100043933, LOC670673, LOC100042254, LOC100043934, LOC100042267, LOC100042275, LOC668967, LOC434724, LOC100043935, LOC668968, LOC546182, Mycs
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-358N14.T7 (MSMg01no358_n14.b1)MSMg01-358N14.TJ (MSMg01no358_n14.g1)
ACCAG468406AG468407
length732723
length of high quality
(start - end)
464 (37 - 500)471 (67 - 537)
definitionCHROMAT_FILE: MSMg01no358_n14.b1 PHD_FILE: MSMg01no358_n14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:53:13 2005CHROMAT_FILE: MSMg01no358_n14.g1 PHD_FILE: MSMg01no358_n14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:53:13 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTAGA
ACCATAGAAACGCCTGGAAATATTAGAAGAACAAATAAGGATGTGAGGTC
TGGATAAACATCTTATGCTGCTGAGCATAAGATGTGGGGGGAAGCTTGGG
AGACCTGGCAAACATCAGAGTCCTACTTGGCCTGTTAGGCCAGATGTACA
TGGGAATGCTGGGTAATATGAGTATCTCAGTACACATAGAAGGTCTCAAT
AATGATTAGAGTCTTATAAAGCACAGAAGCCAAATGAAGTCTAATATAAA
TGTGAGGTCTGGTACAGAAATGAGGTCTAGTAACTTAGGGAGGCCTAGAG
AATATGGAAGGCCTTGTGACCAAGCAGGTTATGGCTCCCTGGAATACCTG
TTAAATTTGAGTGACCTGGGATGCATGGGCTTTCTGAGAAAAACTTGCGG
CTTGCTAAGCCCTGGAACCTGGAAAGCTTAGGAGGTGTGATAAGCATTAN
AAGCCTGGTGAATAAGGACAGGATTATTAAGCCTGGGGATGCTAGAATCC
AAAAATGATGGGGGAAGCCCTGCAGGTCTAGAAGGATTGGGAGGTGTGGA
AATACCTCACAAGAGTGTTATGCCTGTGGAGGCTGGAAAAGAACTGCCAC
GATGAGATGGTCCCACCCTGGGGAAGCCCAATAGCGGGGAAAGCCCATAA
CCTTAGAAAACCTGGGACCCTTGGAGACCTAC
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXACTCATACACTTAGATCTTTGGGTACAGAATTAG
CATTACAATACATAGACCAAACCTCAATCTATACAAAGAACTACAGGCAA
CTAAAGAATGCTGAAAGGGGGTGAAATTCTTTCCCTGTGAAAAAGATACA
ACTGATTTTCCTAAAAAACTTGCATACAAGTAACATTATACATACTGAGC
AGGTTGTATTAGGAATTTGTATGTATATGCATATACATGTATGCATAAAT
ATATGTATGTAATGATAATTAAGGTAAAAAGAGGCAATGGGTAAGAAATA
GTGCAAAGAGAGTATATAGAAAGACTTGAAGGAGAAAAGGAAGGGGAAAT
GGTATAAATGCACAACAATCTCAAAATATAAAAGAAATAATATTTACAAA
AACCAAGTCCTGAACAGTGTAAATAATAGATGACATATCAAAAAATAGGT
GGTGAATCACATGGGGACTGACCCCAGATGAAAAGTTTCAAATAATCAAA
TGTTGAGAGAGGAAGAACCATCTTTCCACAAGGATGAATCCTTGAATGGT
TGGTTATATAACACCAAATGGGCAGTCTTAGAATATACACTTGTCCCCAT
TTAAGAACCCCTTTGTCTCCCTTTTGAGGACCAGGCCTGTTGTCCAAAAA
GGCCATAAAGCCCCCCTTATAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no358_n14.g1 MSMg01no358_n14.g1 CHROMAT_FILE:
MSMg01no358_n14.g1 PHD_FILE: MSMg01no358_n14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:53:13 2005
         (471 letters)



>mm_chrX_4118148_4119018
          Length = 871

 Score =  580 bits (300), Expect = e-170
 Identities = 303/304 (99%)
 Strand = Plus / Minus

                                                                       
Query: 168 cattatacatactgagcaggttgtattaggaatttgtatgtatatgcatatacatgtatg 227
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 871 cattatacatactgagcaggttgtattaggaatttgtatgtatatgcatatacatgtatg 812

                                                                       
Query: 228 cataaatatatgtatgtaatgataattaaggtaaaaagaggcaatgggtaagaaatagtg 287
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 811 cataaatatatgtatgtaatgataattaaggtaaaaagaggcaatgggtgagaaatagtg 752

                                                                       
Query: 288 caaagagagtatatagaaagacttgaaggagaaaaggaaggggaaatggtataaatgcac 347
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 caaagagagtatatagaaagacttgaaggagaaaaggaaggggaaatggtataaatgcac 692

                                                                       
Query: 348 aacaatctcaaaatataaaagaaataatatttacaaaaaccaagtcctgaacagtgtaaa 407
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 aacaatctcaaaatataaaagaaataatatttacaaaaaccaagtcctgaacagtgtaaa 632

                                                                       
Query: 408 taatagatgacatatcaaaaaataggtggtgaatcacatggggactgaccccagatgaaa 467
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 taatagatgacatatcaaaaaataggtggtgaatcacatggggactgaccccagatgaaa 572

               
Query: 468 agtt 471
           ||||
Sbjct: 571 agtt 568


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 871
Length adjustment: 10
Effective length of query: 461
Effective length of database: 861
Effective search space:   396921
Effective search space used:   396921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)