BAC Information

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BAC

Clone NameMSMg01-359M08
ChromosomeX (Build37)
Map Location 85,710,051 - 85,710,467
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667876, EG667883
Downstream geneLOC667891, EG245506, LOC667911, LOC100041707, EG436213, LOC667919, LOC100041727, LOC667934, Pet2, EG629419
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-359M08.T7 (MSMg01no359_m08.b1)MSMg01-359M08.TJ (MSMg01no359_m08.g1)
ACCAG469106AG469107
length786761
length of high quality
(start - end)
208 (30 - 237)413 (55 - 467)
definitionCHROMAT_FILE: MSMg01no359_m08.b1 PHD_FILE: MSMg01no359_m08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:54:20 2005CHROMAT_FILE: MSMg01no359_m08.g1 PHD_FILE: MSMg01no359_m08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:54:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCTXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATTGTTTTTAA
TAGCTGTGTAGTACACCATACTGTAAATGTACCACATTTTCTGTATCCAT
TCCTTTGTTGAGGGACATCTGGGTTCTTTCCAGCTTCTGGATATTATAAA
TAAGGCTCCTATGAAAATAGTGAGGAACACTCCTCCACTACTGGTGGCAT
TGCAAGCTTGTACAACCACTCTGGAAGTCAGTCTGGAGGTTCCTCACAAA
ATTATACCAAATACTACCGGAAGATCCAGCAATACCTCTTTTGGGCACAT
ACTCTTAACAAGTTCTACCTGTTTACAACAACACATGCTCCTCTATGTCC
ATAGCAGCCTTATTTGTATATTACCATGTTATTTTATTTACCCCCCCCCC
CCCATATTTGTTTCTCTTTACTTTCCTCCCCTCCTCTCCCCTTTCCTTAC
CTCCTCCCCTTTCCCCCACTCTTTCTTTTTCTTCCACCTCCTCCATCTCT
CATGTTTCTTCCCCCCTCCCATCAACTCTCCTTTTTCCCCCTCTTTCCAC
ATTTTTTTCCTTTTTCCCGATTATTTTTACTACATACTCCTTTTTTTCCT
CTTCCTTCCACTTTTTCCTTTATTTTTTATCTCTTTCATCCATTCCCTTT
TTCCACACCTTTTCCCCCATTTCCCCCTTAATCCTCCATTATCAAATCCC
TTCCTCTCCCTTCTTTTCCCCCCACACTCACTCCCTCCTCTATCCCCTCT
ACCCACCATTTTTTTCCTCCTATCCTCACCCTTTTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXTTACCAATTAAAATATGTCTGTAGTAGGCGTTAGAGGAGAAGAGAG
AAAGAGAACAAAACCTTTTAAAAGAGATAATGGCTCAATGTTTTCCTAAT
ATTAGGCAGGATTTAGACATACAGTTTGGCAAAGCTCAAAGATCACTTTA
GAAGACCAACCCCCAAATACTGAGACTTGTTGAAACATGAATTCCAAAGA
GTTGTATTCTTTTTTAAAAGAGGAGAAACATAAATGATCATATACAAAAG
AACCTTCTTGAGATGACAGCAGATTTCCCATTGGATAATTTACAGAACAG
AAAGATACAATAAAATGTCTAATACAGTGGCAACAAACATCTCCCAACAT
ACTAAATGTATCTTACAAGAAATTAAGAAAATGTTCAAGTTCAGATGAAA
AGACAATAATTATGTGTAAATATAGAAACTTAGGGGTCTCAGTGATTATG
GGAAATATATGCCTAAACTTAAATTAATTTAAATTTTTTAATGAGGCTCC
CCTAAATACTTTTAAGGCTATTACAGTTTAAAAAAAAAGGTTCCAATTTA
ACTGGTTTAAAAGGGAGGTGGGGCAAAGATTTTTTTAAGGCTCTCTCCCT
TTTTCCCCTTCTCCTTGTGTTACTACCTCCCTCTTAACCCTCTCATTTTT
CCTTATACTCCCATCATCCCCCTCCTTTTTTAATTCCCCCTTATCTTTCC
CCTCTCTTCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no359_m08.g1 MSMg01no359_m08.g1 CHROMAT_FILE:
MSMg01no359_m08.g1 PHD_FILE: MSMg01no359_m08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:54:20 2005
         (413 letters)



>mm_chrX_85709851_85710667
          Length = 817

 Score =  735 bits (380), Expect = 0.0
 Identities = 407/418 (97%), Gaps = 6/418 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttaccaattaaaatatgtctgtagtaggcgttagaggagaagagagaaagagaacaaaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 ttaccaattaaaatatgtctgtagtaggcgttagaggagaagagagaaaaagaacaaaac 260

                                                                       
Query: 61  cttttaaaagagataatggctcaatgttttcctaatattaggcaggatttagacatacag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttttaaaagagataatggctcaatgttttcctaatattaggcaggatttagacatacag 320

                                                                       
Query: 121 tttggcaaagctcaaagatcactttagaagaccaacccccaaatactgag---acttgtt 177
           ||||||||||||||||||||||||||||||||||||||||||||||||||   || ||||
Sbjct: 321 tttggcaaagctcaaagatcactttagaagaccaacccccaaatactgagacaacatgtt 380

                                                                       
Query: 178 gaaacatgaattccaaagagttgtattc--ttttttaaaagaggagaaacataaatgatc 235
           ||||||||||||||||||||||||||||  |||||||||| |||||||||||||||||||
Sbjct: 381 gaaacatgaattccaaagagttgtattcttttttttaaaa-aggagaaacataaatgatc 439

                                                                       
Query: 236 atatacaaaagaaccttcttgagatgacagcagatttcccattggataatttacagaaca 295
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 440 atatacaaaagaaccttcttgagatgacagcagatttgccattggataatttacagaaca 499

                                                                       
Query: 296 gaaagatacaataaaatgtctaatacagtggcaacaaacatctcccaacatactaaatgt 355
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gaaagatacaataaaatgtctaatacagtggcaacaaacatctcccaacatactaaatgt 559

                                                                     
Query: 356 atcttacaagaaattaagaaaatgttcaagttcagatgaaaagacaataattatgtgt 413
           |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 560 atcttacaagaaataaagaagatgttcaagttcagatgaaaagacaataattatgtgt 617


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 413
Length of database: 817
Length adjustment: 9
Effective length of query: 404
Effective length of database: 808
Effective search space:   326432
Effective search space used:   326432
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)