Query= MSMg01no359_p16.b1 MSMg01no359_p16.b1 CHROMAT_FILE:
MSMg01no359_p16.b1 PHD_FILE: MSMg01no359_p16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:54:36 2005
(307 letters)
>mm_chrX_16280396_16281102
Length = 707
Score = 549 bits (284), Expect = e-161
Identities = 302/316 (95%), Gaps = 13/316 (4%)
Strand = Plus / Plus
Query: 5 gaattcactcacactaaagtgagagattgaggaatatgtgtttggagaaactccaatcca 64
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 192 gaattcactcacactaaagtgagagattgaggaatatgtgtttggagagactccaatcca 251
Query: 65 agagactttctgatgtaatgcttcaggcaaagtgacaaaacagaacaggaaattctagct 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 agagactttctgatgtaatgcttcaggcaaagtgacaaaacagaacaggaaattctagct 311
Query: 125 aggccttgctcacgttcttgctggagttcaagtacccaacccaggctgtcattgtctttc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 aggccttgctcacgttcttgctggagttcaagtacccaacccaggctgtcattgtctttc 371
Query: 185 tgtgtatcgacctgcttgcctagttttttttttt-------------ctaacccaattgc 231
|||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 372 tgtgtatcgacctgcttgcctagttttttttttttttttttttttttctaacccaattgc 431
Query: 232 tgcccatctatttcttttggttttctttcaataattttatattcacattatgacaatgtt 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 tgcccatctatttcttttggttttctttcaataattttatattcacattatgacaatgtt 491
Query: 292 gttcagctcctctgag 307
||||||||||||||||
Sbjct: 492 gttcagctcctctgag 507
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 307
Length of database: 707
Length adjustment: 9
Effective length of query: 298
Effective length of database: 698
Effective search space: 208004
Effective search space used: 208004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no359_p16.g1 MSMg01no359_p16.g1 CHROMAT_FILE:
MSMg01no359_p16.g1 PHD_FILE: MSMg01no359_p16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:54:36 2005
(486 letters)
>mm_chrX_16420581_16421466
Length = 886
Score = 915 bits (473), Expect = 0.0
Identities = 482/485 (99%)
Strand = Plus / Minus
Query: 1 catatcaaattatgcaaaccacaaaagtcaatcaagcaagacattttcatgaaatacctt 60
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 catatcaaattaagcaaaccacaaaagtcaatcaagcaagacattttcatgaaatacctt 426
Query: 61 gggaagaaaatctaaaactaaataaacctagttttgatttggaaaacgttctcactttct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 gggaagaaaatctaaaactaaataaacctagttttgatttggaaaacgttctcactttct 366
Query: 121 aaaatggaagaaagatgatttgtgaaaaaacagagaataaagtgctttctgaaaatgctc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 aaaatggaagaaagatgatttgtgaaaaaacagagaataaagtgctttctgaaaatgctc 306
Query: 181 aattaaactctaatatagataaacagttgctgtccaagatataactaaagatgtcatagg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 aattaaactctaatatagataaacagttgctgtccaagatataactaaagatgtcatagg 246
Query: 241 cactgatagacacccaaaacagggtaagctttgtttcttttcttgataatgtttatgact 300
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 245 cactgagagacacccaaaacagggcaagctttgtttcttttcttgataatgtttatgact 186
Query: 301 ctgagcagggtgtttcacaaagcatttcattatatctttgcagcaaaactgttaaatcaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ctgagcagggtgtttcacaaagcatttcattatatctttgcagcaaaactgttaaatcaa 126
Query: 361 tagaaattttttttctgcttttccttaatatggtctgaagtttagtttactttttaatga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 tagaaattttttttctgcttttccttaatatggtctgaagtttagtttactttttaatga 66
Query: 421 aacaatttagtttgcatataaaattggtttaattatagcattttcatgcataaatattgt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 aacaatttagtttgcatataaaattggtttaattatagcattttcatgcataaatattgt 6
Query: 481 gcgct 485
|||||
Sbjct: 5 gcgct 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 886
Length adjustment: 10
Effective length of query: 476
Effective length of database: 876
Effective search space: 416976
Effective search space used: 416976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
