BAC Information

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BAC

Clone NameMSMg01-360A22
ChromosomeX (Build37)
Map Location 71,486,829 - 71,487,214
singlet/doubletsinglet
Overlap geneFlna
Upstream geneXlr4c, Xlr3b, Xlr5c, EG434795, EG667187, LOC630169, Zfp275, Gm369, Zfp92, Trex2, Uchl5ip, Bgn, Atp2b3, LOC732481, Dusp9, Pnck, Slc6a8, Bcap31, Abcd1, Plxnb3, Srpk3, Idh3g, Ssr4, Pdzd4, L1cam, Avpr2, Arhgap4, Ard1, Renbp, Hcfc1, LOC100041206, LOC667264, Irak1, Mecp2, Opn1mw, LOC627455, Gm1538, LOC628388, Tktl1
Downstream geneEmd, LOC100041344, Rpl10, Snora70, Dnase1l1, Taz, B230340J04Rik, Atp6ap1, Gdi1, D0HXS9928E, Plxna3, Lage3, Ubl4, Slc10a3, 1810037C20Rik, G6pdx, Ikbkg, EG628456, LOC628465, LOC100041484, LOC674920, EG245472, Olfr1326-ps1, Olfr1325, EG434797, LOC385383, EG667379, LOC667382, LOC546321, LOC667387, EG628518, Olfr1327-ps1, LOC628637, LOC667413, LOC100041594, LOC627775, EG546325, LOC100041017, EG628573, LOC100041642, LOC667437, EG667446, LOC669291, Gab3, Dkc1, Mpp1, EG547412, 4930428E23Rik, EG667190, F8, LOC572559
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-360A22.T7 (MSMg01no360_a22.b1)MSMg01-360A22.TJ (MSMg01no360_a22.g1)
ACCAG469324AG469325
length1,044777
length of high quality
(start - end)		---386 (75 - 460)
definitionCHROMAT_FILE: MSMg01no360_a22.b1 PHD_FILE: MSMg01no360_a22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:54:42 2005CHROMAT_FILE: MSMg01no360_a22.g1 PHD_FILE: MSMg01no360_a22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:54:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAAATATACACAATCCTCGCTCTNNTTATTCTACCCTCTTTTCCCATATT
CCCTCTTTTCCTCCTCTCTCCCTTTAAATTACAGCCGCGTCCTCCTCACT
GCCTCCCCCTACCTACACACAAAAGAGATAGAGTTAAACACAATACTAAC
CATAGGAGATTAAACTCACGAATACCACCCAAACAACTATACTTAGCCAC
AGACAACTATTTTTCGCCCTTACTTCAGCTCGAAGAAGTAGAGAGACGAG
ATGCCAACTAGAATAGTAGACTATGTGACGGAACAGTGAAATAGCGTCTG
TATAATCGCATTCTACCCCTCGAGCATCCCATATATATATTAGCGATATT
CCACACACATACCCGCACCAAATTAAATCACACCTGATAAAATACATTTG
ACTACGACGAATTACNCATCAGTAAAGAAGCGGCCACGACCGATTCCGGT
ATAGAGCTGAAAACATCGCACATATGATGCCATCACAGACCTAAAAATGA
AGAAGACGTAGGGCACTAACGAACATAAAAGTACTATACCCCACCTATAT
CGAGCCCCCTAGATCCGTGCGATTTCTGGCCTCGATATAGATCAGGTAAA
TAAATGTGGTACCGAAACACGCAAATATGCAACTCATATTCCCGAGCTAC
ATCGGCGTAGGGGTAACCTGTCTCCGCGAAACGTACACACATATCAAACA
GGGTCTTATCGTGATATACATATATATGATGTTATTGGCGCAACAACGCA
ACGGAGGTATATCAGTCACGCGGATAATGAAAGATCAGTATATGCTTGGG
GTTCCGCATAGCGTCGTCGTGCGAGTTATGAATAACACCTAAATTCTGCC
GATACGTCGAAAATCGGTATACCGAATATCGTGCTCTCATAAACAAATTT
GCGAGGTGTAGAAAAATATTAAGGAGACATGTTTGTGTAGCCTCTACCAT
GGCCTTCTCTAAACAATCTCTAGTGCTATATATTCTATTCCAGCTAAAGT
CATAAATAGACCTACATATATGTCGCACTTATATCAGCCTTAAT

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACTGTGGAGACCCGAAGTGCTGGACA
GGGAGAAGTGCTTGTATATGTGGAGGACCCAGCTGGACACCAGGAAGAGG
TAGGATTATCCATTAGCAGGGCAGGATTCTGTTATGCCCCCTTTTAAAGG
GGTTGCTCTTAACACTCTTCTCATTACAGGCAAAAGTGACTGCCAATAAT
GACAAGAACCGTACTTTCTCTGTCTGGTATGTCCCTGAAGTGACAGGGAC
TCATAAGGTGAGTCCTTGGCTGAGAAGGAAGCTGGTGGCCATGGGTAGTT
GGTGAAGGGCCCCTTACCTCACTCTCACAGCCTGCCCCTTCTGGGAACAG
GTGACTGTGCTCTTTGCTGGCCAACATATTGCCAAGAGCCCCTTTGAGGT
GTATGTGGACCAGTCACAGGGTGATGCCAGCCAAGTGACTGCCCAGGGGC
CTGGTCTGGAGCCCAGTGGGATTATTGCCCACAAAACTACCCACTTTGAA
TCTTCCCCGCGGGGGAGGGGAGAAGTCCCTGCCCCGCCCGCTTTGGGGAA
AAGTTTTGTCGGTCCCTCCAAACCGACACCTGTCCTTGTGAACGAATTTG
TTCGTCCTTTTCTCCATATTCGCCCTCCCCCCCCCACTTCCCCCATCCGT
TCTCTGCACGACCTTTCCTTTTTCCTTTATAGCCTTTTCTATCCCTCTTG
TATTTCCTCCTTCCATCCCTTATCCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no360_a22.g1 MSMg01no360_a22.g1 CHROMAT_FILE:
MSMg01no360_a22.g1 PHD_FILE: MSMg01no360_a22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:54:42 2005
         (386 letters)



>mm_chrX_71486629_71487414
          Length = 786

 Score =  739 bits (382), Expect = 0.0
 Identities = 385/386 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   actgtggagacccgaagtgctggacagggagaagtgcttgtatatgtggaggacccagct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 actgtggagacccgaagtgctggacagggagaagtgcttgtatatgtggaggacccagct 527

                                                                       
Query: 61  ggacaccaggaagaggtaggattatccattagcagggcaggattctgttatgcccccttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 ggacaccaggaagaggtaggattatccattagcagggcaggattctgttatgcccccttt 467

                                                                       
Query: 121 taaaggggttgctcttaacactcttctcattacaggcaaaagtgactgccaataatgaca 180
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 466 taaaggggttgctcttaacactcttcccattacaggcaaaagtgactgccaataatgaca 407

                                                                       
Query: 181 agaaccgtactttctctgtctggtatgtccctgaagtgacagggactcataaggtgagtc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 agaaccgtactttctctgtctggtatgtccctgaagtgacagggactcataaggtgagtc 347

                                                                       
Query: 241 cttggctgagaaggaagctggtggccatgggtagttggtgaagggccccttacctcactc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 cttggctgagaaggaagctggtggccatgggtagttggtgaagggccccttacctcactc 287

                                                                       
Query: 301 tcacagcctgccccttctgggaacaggtgactgtgctctttgctggccaacatattgcca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 tcacagcctgccccttctgggaacaggtgactgtgctctttgctggccaacatattgcca 227

                                     
Query: 361 agagcccctttgaggtgtatgtggac 386
           ||||||||||||||||||||||||||
Sbjct: 226 agagcccctttgaggtgtatgtggac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 386
Length of database: 786
Length adjustment: 9
Effective length of query: 377
Effective length of database: 777
Effective search space:   292929
Effective search space used:   292929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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