BAC Information

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BAC

Clone NameMSMg01-360E07
ChromosomeX (Build37)
Map Location 140,471,887 - 140,472,268
singlet/doubletsinglet
Overlap genenone
Upstream geneRgag1, LOC209541, Chrdl1, Pak3, Capn6, Dcx
Downstream geneLOC666628, LOC666633, LOC100039378, LOC100039243, Alg13, LOC100039407, Trpc5, LOC100039436, Zcchc16, LOC666655
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-360E07.T7 (MSMg01no360_e07.b1)MSMg01-360E07.TJ (MSMg01no360_e07.g1)
ACCAG469484AG469485
length728760
length of high quality
(start - end)
455 (68 - 522)370 (75 - 444)
definitionCHROMAT_FILE: MSMg01no360_e07.b1 PHD_FILE: MSMg01no360_e07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:54:58 2005CHROMAT_FILE: MSMg01no360_e07.g1 PHD_FILE: MSMg01no360_e07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:54:58 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
ATCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAAGAATTATCAACTTATGGCATAGCACTGAGGCAATGGCACAAG
GAAATAACTGGTTGATAGAAAGTGTCCCTGAGTTTCTGAATGATGCAAGC
CTTTATTGCTGCATAGCCAAAGGGAAACAGAAATCCTTCACAAAAATCAA
AGAGAGGAGCCAATAAACACCTTTCATACAGCAAGATCAAAAACTGCTCT
TATAAAACTGGCAAAGTGTACAAAACAGGCAAAACAAGTTTCTGTGTCAG
TAAAGTAGGATCTTCACTTATTTTTTCAATTTTACACTTTCTCAGTGTAC
CAATTTCTATAAAACATGACCTTTCAAAGAATCAGCTTGACTAAGTGTTT
AATAAACAATCCTGTGCAACTATATTCCAGCTGCATCATTGGACATAAAC
TGAATTTTCCATGTGTTGCCACTGATGTGAGCCATTATCCTGTTGTGCTT
CAGGAGATTTATATGACCTTCATCAAGCTATCCAAATATGAAAATGAATA
AGAACCCAATTTGCTAACTGTGACAGACAAAACAATTCTTTAAGGCCACT
AGTGCTACATTTATGAGTCCACCTTTGTCCGTGTTCCTGAATCTAGTCAT
AATCTGTTAATATATTGGAAATTTAACCTGCATCTGTTCTTACCATAGAT
TACAGTTTTGACCCTTATCTCCTGAATT
NCGATGCTGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTGTTCAGTTCTGAGCCACATTTTT
GTATGGGGGTTATTTGATTTTCTGAAGTTCACCTTGAGTTCTTTATATAT
GTTGCATATTAGTACCCTATCTGATTTAGGATAGGGAAAGATCCTTTCCC
GAACTGTTGGTGGTCTTTTTGTTTTATTGATGGTGTCTTTTGCCTTGCAG
AAACTTTGGAGTTTCATTAGGTCCCATTTGTCAATTCTCGATCTTACAGC
ACAAGCCATTTCTGTTCTGTTCTTTAATTTTTCCCCTGTGCCCATATCTT
CAAGGCTTTTCCCCCCTTTCTCCTCTATAAATTTCAGTGTCTCTGGTTTT
ATATGAAGTTCCTTGATCCACTTAGATTTGACCATATTACAAGGAGATAA
GCATGGATCGATTCGCATTCTTCTACATGATTACAACTAGTTGTGCCAGC
ACCAATTGTTGAAAATGCTGTCTTTCTTCCACTGCAAGGTTTTTACTCCC
TTTGCGAATATCCTGTGATCATAGGTGTGGGGGTTTCCTTCCGGGGCTTT
CATTCTGTCCCCTTGGTTTTCCGTGCTTGTCCCTTTTCTCGTACCCCTGC
CGGTTTTTTATTCCCATTGTTTCTCGTCTTTTATCCTCCAATCCCGCCCC
GTTCGTTTCCCTCCCCCAAGCTTTTTTCTTTCCCCTTTTTCCACACCTTG
TTCCTCTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no360_e07.b1 MSMg01no360_e07.b1 CHROMAT_FILE:
MSMg01no360_e07.b1 PHD_FILE: MSMg01no360_e07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:54:58 2005
         (455 letters)



>mm_chrX_140471614_140472469
          Length = 856

 Score =  321 bits (166), Expect = 6e-92
 Identities = 332/392 (84%), Gaps = 21/392 (5%)
 Strand = Plus / Minus

                                                                       
Query: 74  tgatgcaagcctttattgctgcatagccaaagggaaacagaaatccttcacaaaaatcaa 133
           ||||||||| ||| || ||||  |||||| |||||||||||||| |||||||||||||||
Sbjct: 655 tgatgcaaggcttcatggctgtgtagccagagggaaacagaaattcttcacaaaaatcaa 596

                                                                       
Query: 134 agagaggagcc-aataaacacctttcatacagcaagatcaaaaactgctcttataaaact 192
           |||||| | || || |||| |||||||| ||||||||||||||| | |||  | ||||||
Sbjct: 595 agagagcacccaaacaaacccctttcatccagcaagatcaaaaaattctcaaagaaaact 536

                                                                       
Query: 193 ggcaaagtgtacaaaacaggcaaaacaagtttctgtgtcagtaaagtaggatcttcactt 252
           ||||| |||| |  |||| ||||| ||||||||| |||||||||||||||||||||||||
Sbjct: 535 ggcaaggtgtgc--aacaagcaaaccaagtttctctgtcagtaaagtaggatcttcactt 478

                                                                       
Query: 253 attttt----tcaattttacactttctcagtgtaccaatttctat-aaaacatgaccttt 307
           |    |    |||||||||| ||||||| ||||||||||| || | |||||||||| |||
Sbjct: 477 a----tagcctcaattttactctttctcggtgtaccaattgctgtcaaaacatgacattt 422

                                                                       
Query: 308 caaagaatcagcttgactaagtg-ttt-aataaa-caatcctgtgcaactatattccagc 364
           |||||||||| |||| ||||| | ||| || ||| | ||  |||||||||||||||||||
Sbjct: 421 caaagaatcaacttgtctaag-gatttcaa-aaatc-attttgtgcaactatattccagc 365

                                                                       
Query: 365 tgcatcattggacat-aaactgaattttccatgtgttgccactgatgtgagccattatcc 423
           ||||||||||||| | ||| |||||   ||||||||||||||||||||||||  ||| ||
Sbjct: 364 tgcatcattggac-tgaaagtgaatggcccatgtgttgccactgatgtgagctgttagcc 306

                                           
Query: 424 tgttgtg-cttcaggagatttatatgaccttc 454
           ||||||| |||||||||| |||||||||||||
Sbjct: 305 tgttgtggcttcaggagaattatatgaccttc 274


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 455
Length of database: 856
Length adjustment: 10
Effective length of query: 445
Effective length of database: 846
Effective search space:   376470
Effective search space used:   376470
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)