Query= MSMg01no361_c02.b1 MSMg01no361_c02.b1 CHROMAT_FILE:
MSMg01no361_c02.b1 PHD_FILE: MSMg01no361_c02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:56:04 2005
(694 letters)
>mm_chrX_101478111_101479201
Length = 1091
Score = 1286 bits (665), Expect = 0.0
Identities = 678/683 (99%), Gaps = 3/683 (0%)
Strand = Plus / Plus
Query: 5 gaattcattaaattacgaataagaaaaagccttatagtaaacatagcaattctgaagtat 64
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 205 gaattcattaaattacgaataagaaaaagccttatagtaaaca--gcaattctgaagtat 262
Query: 65 cactatagattaagatacctggtcatctaaacagtgtatgtatatatggaatcctttgct 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 cactatagattaagatacctggtcatctaaacagtgtatgtatatatggaatcctttgct 322
Query: 125 atttaccaaatgttttaaggagttgttatgtggacactggtttagataaatgtatgagcg 184
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ttttaccaaatgttttaaggagttgttatgtggacactggtttagataaatgtatgagcg 382
Query: 185 tgtacacagacacatgtgtgggtgtacaacatccattttacttctgtctctgtataactt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tgtacacagacacatgtgtgggtgtacaacatccattttacttctgtctctgtataactt 442
Query: 245 gatagccaatgcagtgcactgaagttggaaataggaaaggctattaactccctaagcttt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 gatagccaatgcagtgcactgaagttggaaataggaaaggctattaactccctaagcttt 502
Query: 305 tgggatcattctcagtataaataactctcaaatgacatcaaggttcatgagactttagag 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tgggatcattctcagtataaataactctcaaatgacatcaaggttcatgagactttagag 562
Query: 365 aaaaattaattttcatttaaaacaaaacttttgggggtaaaaacaaaatactaatcacta 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 aaaaattaattttcatttaaaacaaaacttttgggggtaaaaacaaaatactaatcacta 622
Query: 425 gataagagcaacagtggtgattaaagataacatgacttttttttctaaaaagggcacaat 484
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 623 gataagagcaacagtggtgattaaagataacatgacttttttt-ctaaaaagggcacaat 681
Query: 485 aaaaaactgtaattataggtatctaaaagtaaaatgcccaaagtacaaatatagctcatt 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 aaaaaactgtaattataggtatctaaaagtaaaatgcccaaagtacaaatatagctcatt 741
Query: 545 ttttgataaattctaacttatatgttttcaaactaattttcagattgacaaggaaatata 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 ttttgataaattctaacttatatgttttcaaactaattttcagattgacaaggaaatata 801
Query: 605 actggaaggaggaaagaggagaaaaaaaaccctacacttctgtttttattcctgtttaat 664
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 802 actggaaggaggaaagaggagaaaaaaacccctacacttctgtttttattcctgtttaat 861
Query: 665 tttaagagaaaaaaaatggtctc 687
|||||||||||||||||||||||
Sbjct: 862 tttaagagaaaaaaaatggtctc 884
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 694
Length of database: 1091
Length adjustment: 10
Effective length of query: 684
Effective length of database: 1081
Effective search space: 739404
Effective search space used: 739404
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no361_c02.g1 MSMg01no361_c02.g1 CHROMAT_FILE:
MSMg01no361_c02.g1 PHD_FILE: MSMg01no361_c02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:56:04 2005
(603 letters)
>mm_chrX_101508282_101509285
Length = 1004
Score = 1075 bits (556), Expect = 0.0
Identities = 582/598 (97%), Gaps = 13/598 (2%)
Strand = Plus / Minus
Query: 19 atttctcaaacctaattttagtagttaattacttactttagaaaacataaaagattttat 78
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1004 atttctcaaacctaattttagtagttaattacttactttagaaaacataaaagattttat 945
Query: 79 atctgtgcttcgcaaatcattttgtttttgttttatatttgccttggtttttccctttaa 138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 944 atctgtgcttcgcaaatcattttgtttttgttttatatttgccttggtttttccctttaa 885
Query: 139 tatgaataaagacttcagttgtgtaaaggtcctacaagtacctgatagtcattacaaagt 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 884 tatgaataaagacttcagttgtgtaaaggtcctacaagtacctgatagtcattacaaagt 825
Query: 199 gatgactt------------tctctctctctctctctttttttaattgttttgtcctgct 246
|||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 824 gatgactttctctctctctctctctctctctctctctttttttaattgttttgtcctgct 765
Query: 247 aatcaaatgtccctgtagtgttgtgagtctttatttttc-tttttccccctccttttgtg 305
|||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 764 aatcaaatatccctgtagtgttgtgagtctttatttttcttttttccccctccttttgtg 705
Query: 306 actagagaggcagttaacaaaggaacaaaattctctttcactttttcagatattcatttt 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 actagagaggcagttaacaaaggaacaaaattctctttcactttttcagatattcatttt 645
Query: 366 tcttggcagcagtactttcattgcccttagttaacagaggccacagtgaacaaaattaat 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 tcttggcagcagtactttcattgcccttagttaacagaggccacagtgaacaaaattaat 585
Query: 426 tatctaagacttcagatattgaagagtctaaaagaatcaggttcctcacatgacatagtt 485
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 584 tatctaagacttcagatattgaagagtctgaaagaatcaggttcctcacatgacatagtt 525
Query: 486 atgattagaaaaaggaaagtcataattaactggctttgaaggactaagcaaactgacttt 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 atgattagaaaaaggaaagtcataattaactggctttgaaggactaagcaaactgacttt 465
Query: 546 attagctagtaactttggtatcatatacatacaacatatatttggctgttttttatgg 603
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 464 attagctagtaactttggtgtcatatacatacaacatatatttggctgttttttatgg 407
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1004
Length adjustment: 10
Effective length of query: 593
Effective length of database: 994
Effective search space: 589442
Effective search space used: 589442
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
