BAC Information

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BAC

Clone NameMSMg01-361M22
ChromosomeX (Build37)
Map Location 62,082,808 - 62,083,278
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666729, EG627470, 3830417A13Rik, Slitrk4
Downstream geneLOC100040011, Ctag2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-361M22.T7 (MSMg01no361_m22.b1)MSMg01-361M22.TJ (MSMg01no361_m22.g1)
ACCAG470644AG470645
length795806
length of high quality
(start - end)		512 (47 - 558)471 (78 - 548)
definitionCHROMAT_FILE: MSMg01no361_m22.b1 PHD_FILE: MSMg01no361_m22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:56:57 2005CHROMAT_FILE: MSMg01no361_m22.g1 PHD_FILE: MSMg01no361_m22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:56:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTCTGTTTCTCTCTGTTCCACATTTTTTAATGGGGTTATTTGGTT
CTCTGGATTCTAACTTCTTAAGTTCTTTTTATATATTGGATATTAGCCCT
CTATTGGATGTAGGGTTGGTAAAGATCTTTTCCAAATCTGTTGCTTGTCT
TTTTGTCTTATTGACTATGTCCTTTGCCCAACAGAAGCTTTGATCTTTTA
TGATGTGTCATTTGTCAATTCTTGATCTTAGAGCATAAGCCATTGGTTTT
CTGTTAAGAAAATCTTCTCCTGTGTCCATTTGTTCCAGGATTTTCCAAAT
TTTCCCTTCTATTAGATTCAGTGTATTTGGTAATATATAGCAAGCAGTTC
TAGATCTACTTGGACTTGAGCTTTGTACGAGGAGATAAGAATGGATAAAT
TTGCTTTCTTCTACATGTTGACTGCCAGTTGAACCAGCACAATTTGTTGA
ACATGCTGTCTTTTTTCCCACTGGTTGGTTTTAGCTTCTTTGTCAAATAT
CAAGTGATCATAGGNGAGTGGGTTCATTTCTGGGNCTTCAATTCTATTTC
ATTTATCTACCTGCCTGCCACTGTACCTATTACATGAAGGTTTTTATCAT
ATTTTCCTTGCAAACCAGCTTGTGTTCCAGGAATGGGGGATTTTTTGGTT
GAAAAAAACTTTCTTCTTTCCGGGGATTTTTTTTTATTCCCACCGTATTT
TGATGAATCGCCCCTTTTTATTGGGTTTGTTCCTTATACCTTTTG

NCGAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTATGGGAACTTTAAGGTGGCTTT
CAGTCCCTCACTGGGCAGTATCTCTGGCATTCACAATAGTACCGTATCTT
TTTCAGGCTTCACTGCTGGACCAGGATTATGATCTAATAACCAACCACTC
TAGGAGATAACATAGAAATTTATCTTATCAAAATTGACCACTACATTTAG
AAAGCATTTGGAAAAATAAAACTGTTAGTAAAGCTAGGTTGAGATGTTTT
TGCTACTGGCTCTAATGTAGAAAATCTTAGGGAACAATATGAAACTTAGA
AAGGCACACTCTTATTAGTTAAGCTAGGGAATGTTTATGGTCAGGGAACA
AGAACAAGCACCTGAGAACATTATGAACATTTTAACAACACTAAAGGTAT
GGTATTAAATTAAAACTTAAATCGCTATAGCTAGTGAATATAGATAGAAA
ATTTTATATATAAGAAAGTCTACTAAGCTATTAATGATGATGAAGTGTTT
TAAATCAGAAATAAAATGTTTTGATATTCAAAAATCAACAAATATGAGAA
AAAATAAAATTTATTAGGGGAAGAGATAATGTATCCGATCGATTACCATT
GAAGCAGGATTTTGAAAAACCTGAACATTCTGTTCTTTCTAAAAACACCC
ATTTATAAATAGGAGGGAAACTTCCCTCCTCGGAATCATAAACCTGGGCC
CCTTTCCCCTAAAAAAAAATGTTAATCGGGAGAATCTTATGAAACACCAA
ACAGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no361_m22.g1 MSMg01no361_m22.g1 CHROMAT_FILE:
MSMg01no361_m22.g1 PHD_FILE: MSMg01no361_m22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:56:57 2005
         (471 letters)



>mm_chrX_62082608_62083478
          Length = 871

 Score =  888 bits (459), Expect = 0.0
 Identities = 468/471 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatgggaactttaaggtggctttcagtccctcactgggcagtatctctggcattcacaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tatgggaactttaaggtggctttcagtccctcactgggcagtatctctggcattcacaat 260

                                                                       
Query: 61  agtaccgtatctttttcaggcttcactgctggaccaggattatgatctaataaccaacca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtaccgtatctttttcaggcttcactgctggaccaggattatgatctaataaccaacca 320

                                                                       
Query: 121 ctctaggagataacatagaaatttatcttatcaaaattgaccactacatttagaaagcat 180
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 321 ctctaggagataacatagaaatttagcttatcaaaattgaccactacatttagaaagcat 380

                                                                       
Query: 181 ttggaaaaataaaactgttagtaaagctaggttgagatgtttttgctactggctctaatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttggaaaaataaaactgttagtaaagctaggttgagatgtttttgctactggctctaatg 440

                                                                       
Query: 241 tagaaaatcttagggaacaatatgaaacttagaaaggcacactcttattagttaagctag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tagaaaatcttagggaacaatatgaaacttagaaaggcacactcttattagttaagctag 500

                                                                       
Query: 301 ggaatgtttatggtcagggaacaagaacaagcacctgagaacattatgaacattttaaca 360
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agaatgtttatggtcagggaacaagaacaagcacctgagaacattatgaacattttaaca 560

                                                                       
Query: 361 acactaaaggtatggtattaaattaaaacttaaatcgctatagctagtgaatatagatag 420
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 561 acactaaaggtatggtattaaaataaaacttaaatcgctatagctagtgaatatagatag 620

                                                              
Query: 421 aaaattttatatataagaaagtctactaagctattaatgatgatgaagtgt 471
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaaattttatatataagaaagtctactaagctattaatgatgatgaagtgt 671


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 871
Length adjustment: 10
Effective length of query: 461
Effective length of database: 861
Effective search space:   396921
Effective search space used:   396921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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