BAC Information

Click to search

BAC

Clone NameMSMg01-362G06
ChromosomeX (Build37)
Map Location 59,266,487 - 59,266,661
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC627159, EG631990, LOC632000, LOC100039759, EG245440, LOC100039778, Ldoc1, LOC654353, EG627299, LOC666654
Downstream geneLOC385367, LOC671741, 4933402E13Rik, 4931400O07Rik, 1700019B21Rik, LOC671878, LOC666695
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-362G06.T7 (MSMg01no362_g06.b1)MSMg01-362G06.TJ (MSMg01no362_g06.g1)
ACCAG471087AG471088
length791806
length of high quality
(start - end)
132 (116 - 247)175 (72 - 246)
definitionCHROMAT_FILE: MSMg01no362_g06.b1 PHD_FILE: MSMg01no362_g06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:57:44 2005CHROMAT_FILE: MSMg01no362_g06.g1 PHD_FILE: MSMg01no362_g06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:57:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
TGTCCTTGATCTGCTCAGAGCACTGGCCCAGACTGGATAAAAACTGTGCC
ACTGGTCCAGCAGAGTTTCTGGGTGCCTGGTTCCTGCTGGTACCAGTTAC
TTCTGCTGTTGGGCAGATGTTGTGTCCTCCTCACTTCTGGTCCCTATATC
CTCTCTATTTCTAATTCAGATCACAAGACATATTCCACTGATCTTCACCT
AACGAAAATATATGTGTGCCGGTTATGTCTTTGCAAACTTGCACAAGCTA
AGGCCATCTGGGTAAGACATAGCTCAATTGGGAATGTGCTCCCAGGAGAT
TGGCCTGAAACAAGTCTATCAGACATTTTCTTTATAAATAATTATGTGAG
AAAGCCTAGACTATTGTGGGCTGTGCTTGGTCTTCTTAGGTATATAAAAA
TGCAAACTGACAAATCACTGGGAGCAAGTCAGGAAGCATTGTTTCTCCTT
GACATGTGCTACAATGCCTGCTTCCAGGTTCCTTCCTCAAGTCCTTGACT
TGACTTCCTGAAATAATTGAATTAGATATACCCCTTGTATACCCTTTTTT
ACCCCAGCTGGCTTTTGGAGCTAGGTCTTTATAACCCCTTTATGCATCCC
CTCTATAATTCGTATCCTATTCTCTCTGCCTTACTTTTCAAAATCCTTCC
TTTTCCTTACACCCCCCTCTTTTATCTTTTACGCAATACCTTTTTTTCTC
TTTTTTTTTTTTCTCCATTTTTTTTCTTCTTCTTCTTTCTN
GCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXACTATCTTGGCTTGTGTACCTTCTAATGA
ATTCATCCACTGTCAATAGATAGCTCCAAATCCATGGTCCCATAGATGTT
CTTGGTTAAGTTTGGTGGTAACAAAGTAAATAGACATGAATGTGTAAGGA
GTATTTGTGGGAAGTAGGAAGCATAGATGGTGTGGTAGAAAGGTAGGAGG
TAAGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTCATTGGTCACTTTTTCTTTTCCT
TTCCCCTATATGGTTCTTGCTCCCGCTTTTTTTTCTCTTTGACACATTCC
TTCCTCCCTTTCTTCATTTTCTTATACTCTTTTTATTCTCATTTTTTCTC
TCTCCTTTCTTATTTTTCTTTTTTTCCTTCCTTTATCTTTTTTTCTTTTT
TTATCTTCTTTCCTATTTCTCTTTTTTTTTTTCCTCTTTTTTCCTCTCTC
TCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no362_g06.g1 MSMg01no362_g06.g1 CHROMAT_FILE:
MSMg01no362_g06.g1 PHD_FILE: MSMg01no362_g06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:57:44 2005
         (175 letters)



>mm_chrX_59266287_59266861
          Length = 575

 Score =  339 bits (175), Expect = 8e-98
 Identities = 175/175 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   actatcttggcttgtgtaccttctaatgaattcatccactgtcaatagatagctccaaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actatcttggcttgtgtaccttctaatgaattcatccactgtcaatagatagctccaaat 260

                                                                       
Query: 61  ccatggtcccatagatgttcttggttaagtttggtggtaacaaagtaaatagacatgaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccatggtcccatagatgttcttggttaagtttggtggtaacaaagtaaatagacatgaat 320

                                                                  
Query: 121 gtgtaaggagtatttgtgggaagtaggaagcatagatggtgtggtagaaaggtag 175
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgtaaggagtatttgtgggaagtaggaagcatagatggtgtggtagaaaggtag 375


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 175
Length of database: 575
Length adjustment: 8
Effective length of query: 167
Effective length of database: 567
Effective search space:    94689
Effective search space used:    94689
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)