BAC Information

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BAC

Clone NameMSMg01-362P07
ChromosomeX (Build37)
Map Location 159,445,037 - 159,445,552
singlet/doubletsinglet
Overlap geneCtps2
Upstream geneNhs, Reps2, LOC654358, LOC100041557, LOC667630, Rbbp7, 4932441K18Rik, LOC671250, Syap1, LOC100041607, S100g
Downstream geneLOC100040610, EG637051, Grpr, 1700045I19Rik, Ap1s2, Zrsr2, Car5b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-362P07.T7 (MSMg01no362_p07.b1)MSMg01-362P07.TJ (MSMg01no362_p07.g1)
ACCAG471516AG471517
length757759
length of high quality
(start - end)
534 (42 - 575)510 (73 - 582)
definitionCHROMAT_FILE: MSMg01no362_p07.b1 PHD_FILE: MSMg01no362_p07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:58:30 2005CHROMAT_FILE: MSMg01no362_p07.g1 PHD_FILE: MSMg01no362_p07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:58:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTATCAGACCTTCACAGAAGACCTAACATCAATACTCTTCAAACTATTCC
ACAAAATAGAAACAAAAGGTATTCTACCTAATTCATTCTATGATTCCACA
GTTAGGCTGATACCAAAACCACAGAAATACCCAACAAAGAAAGAGAACTT
CAGACCAATTTTCCTATGAATATTGATGCAAAAATATTCAATGGAATTCT
CAAAAACTGAATCCAAGAACACATCAAAACAATCATTCACCACGATCAAG
TAGGCTTCATCCCAGCCAACATCAAACTAAATGGAGAGAAACTTGAAGAA
ACTGGTCAAAAGATACAAATTGGAAAGGAAGAAGTCAAAATATAATTATT
TGCAAATGATATGATACTATACTTAAGTGACCCCAAAAAAAATCCACCAG
AGAACTCATAAACCTGATAAACAACTTCAGCAAAGTGGCTGGATATAATA
TTAACTCAAACAAATCAGTAGCCTTCCTTTATACAAATGATAAACAAGCT
GAGAAAGAAAATAGGGAAGCAACACCCTTCACAAAAGTGACACACAATAT
AAAATATCTTGATGTGACTCTAACCAAACAAGTGAAAGATCTGTATGACA
AGAACTTCAAGTCTCTGAAGAAAGAAATCAAAGACGACCTCGGAAGATGG
AAGGATCACCCATGTTCATGGATTGTCAGAACTAACATAGTAAATAAAAT
GGCCCTN
TGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXATTTTATGAAGGCAAATTCCCCAGAAGA
TTCTGATCTTAAGTACCCTTTAGAAGCATATCCACGAGTCTCTACTGTCC
CTCAAGGATTCTGAGAGGAACAAGGCTCGAGATTTGTTAGAATGTCAGAA
TGTGCTTTAAAGTGATTAAGAGCATTATTTTTTAAAGGTACTTTGTTTGA
CTGATAGGGCATCGTCAAAATAAAAACTCTTTCATCATTCTTCATATCCA
CACAGAGACTTTGTTTGAATAAAATGATTCCGAGCAATGATCCGTTCATT
TAAATAGTCAGTTTCCGGCTGTGACATGATCTGTGTCACAGCTTCTCTCT
GTAGCTCTGCAGAAACACAAGGACTGTCTTTTTTTCTTTCTAAGACATCC
CTAGATATTATGCTATAATGTTTAATGTGTTTCACTTTAAAATTATACTG
CTCAATTTCTTCTCTAAGTGCGGATGACTTTTCTTCCTTTTGAAAATAAG
CTTTTCTTTATTTTTTATTTTTTATTTGTTTCTGACAGCGTATTGCATTT
ATTTACTTCTTTGTGGGGCTGGACATGAAGGATGGGCCTCATGCCATGGT
TTCTGTATAGAGGTTAAAGGACCACTCTTGACTCCTTCCTTCCACCACAT
GGTTCCCCATAGATGGAATTCAGGCCATCTGGTTCAGTGGAAGCAAGCCT
TCTTAACTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no362_p07.g1 MSMg01no362_p07.g1 CHROMAT_FILE:
MSMg01no362_p07.g1 PHD_FILE: MSMg01no362_p07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:58:30 2005
         (510 letters)



>mm_chrX_159444837_159445746
          Length = 910

 Score =  963 bits (498), Expect = 0.0
 Identities = 509/516 (98%), Gaps = 6/516 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   attttatgaaggcaaattccccagaagattctgatcttaagtaccctttagaagcatatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attttatgaaggcaaattccccagaagattctgatcttaagtaccctttagaagcatatc 260

                                                                       
Query: 61  cacgagtctctactgtccctcaaggattctgagaggaacaaggctcgagatttgttagaa 120
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cacgagtctctactgtcccttaaggattctgagaggaacaaggctcgagatttgttagaa 320

                                                                       
Query: 121 tgtcagaatgtgctttaaagtgattaagagcattattttttaaaggtactttgtttgact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtcagaatgtgctttaaagtgattaagagcattattttttaaaggtactttgtttgact 380

                                                                       
Query: 181 gatagggcatcgtcaaaataaaaactctttcatcattcttcatatccacacagagacttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gatagggcatcgtcaaaataaaaactctttcatcattcttcatatccacacagagacttt 440

                                                                       
Query: 241 gtttgaataaaatgattccgagcaatgatccgttcatttaaatagtcagtttccggctgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtttgaataaaatgattccgagcaatgatccgttcatttaaatagtcagtttccggctgt 500

                                                                       
Query: 301 gacatgatctgtgtcacagcttctctctgtagctctgcagaaacacaaggactgtctttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gacatgatctgtgtcacagcttctctctgtagctctgcagaaacacaaggactgtctttt 560

                                                                       
Query: 361 tttctttctaagacatccctagatattatgctataatgtttaatgtgtttcactttaaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttctttctaagacatccctagatattatgctataatgtttaatgtgtttcactttaaaa 620

                                                                       
Query: 421 ttatactgctcaatttcttctctaagtgcggatgacttttcttccttttgaaaataagct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttatactgctcaatttcttctctaagtgcggatgacttttcttccttttgaaaataagct 680

                                               
Query: 481 tttctttattttt------tattttttatttgtttc 510
           |||||||||||||      |||||||||||||||||
Sbjct: 681 tttctttatttttattttttattttttatttgtttc 716


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 510
Length of database: 910
Length adjustment: 10
Effective length of query: 500
Effective length of database: 900
Effective search space:   450000
Effective search space used:   450000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)