XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCT
GAAATTACGGCTATTAGAATGCTAACCAATATCCCCCAAATTTATAAATT
GTGATTCTGTTTGTATAATAATTTGTCAAGTTACTGTTTCCTTTAATCAC
TTCTCTAATATTTTTAAAGCTTTAGCTTGATCTCTCTGTCTGTCTCTCTA
TGTCTCTCTGTGTGTTTCTCTGTGTCTCTCTTTCTCTCTGTGTCTCTCTG
TGTCTGTCTGTCTGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGT
GTACAGACATAATATATATACCTGTGCATATATGGAGGCCACAAGGTGAT
CTGTCCTATCACTTTCTACCTGATTCCCTTGAGATTGGGTCATGTAGAGA
CTAGGTCATTTACTGAACCCGGAGCTAAGATGGTGGCCAACAAACCCCCG
TGATCCTCCTGTCTGCTCCCCACAGTGCTGAGGTTACAACCATACATGGT
CATGCCTGCTATTTATGTGAATGATAGGGATTTGAACTCAAGTCCTCAGG
AAGTGCTCTTGTGCACTGAGCCATCTGAGCCCTCTCCCTAACTCCTTGAA
TGGTGGATCTTGGACTGTCTGTTATCTGGTCACATACCTGTTTGGTTTTT
ATACCAGTTGTGAGACATACCCTTTAACCTCCCCCTTTGCTTGCACTTTT
CCCGTTATTTTAATCAACTTGGGGCTTTCCATTTCCAGTTTCCCTCTG

NNGGCATGATAGTGGGAGGNCTGGGGGCCGCCTGTTTCAACAATTTAGGT
GAACTATAGAAGTACCAGCGGAATTCTCACCTGAGGAAACCAAATGGCTG
AGAAGCACCTGAAAATATGTTCAGCATCCTTAATCATCAGGGAAATGCAA
ATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGAT
CAAAAATTCAGGTGACAGCAGATGCTATCGAGGATGTGGAGAAAGGAAAA
CTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACTGCCACTCTTTTAGAA
TCAGTCTGGTGGTTCTTTTTTTATTGGACATAGTACTACCGGATGATCCC
ACAATACCTCTCCTGGGCATATATCCAGAAGATGTTCCAACTCATAAGAA
GGACACATGCACCACTATGTTCATAGCAGCCTTATTTATAATAGTCAGAA
GCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGTTACAGAAAACG
TGGTACATTTACACAATGGAGTACTACTCAGCTATTAAAAAAAAAAGAAT
TTATGAAGTTCTTAGGCAAATGGATTGACCTGGAGGGCATCATCCTGAGT
GAGGTAACCCAATCACAAAGGAACTCACATGATATGTACTCACTGATAAG
TGGATATTAGCCCAGAAACTTAGAATACCCCAGATACTAAATACCATTTG
CAAAACACTAGGANACCTCCTAAGAAAGAAGACCCTAGTGTGGAACCCTT
GC

Query= MSMg01no363_k12.b1 MSMg01no363_k12.b1 CHROMAT_FILE:
MSMg01no363_k12.b1 PHD_FILE: MSMg01no363_k12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:59:26 2005
         (533 letters)



>mm_chrX_160787102_160788035
          Length = 934

 Score =  924 bits (478), Expect = 0.0
 Identities = 519/536 (96%), Gaps = 7/536 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctctg-aaattacggctattagaatgctaaccaatatcccccaaatttataaatt 63
           |||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctgaaaaatatggctattagaatgctaaccaatatcccccaaatttataaatt 264

                                                                       
Query: 64  gtgattctgtttgtataataatttgtcaagttactgtttcctttaatcacttctctaata 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gtgattctgtttgtataataatttgtcaagttactgtttcctttaatcacttctctaata 324

                                                                       
Query: 124 tttttaaagctttagcttgatctctctgtctgtctctctatgtctctctgtgtgtttctc 183
           || |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 325 ttattaaagctttagcttgatctctctgtctgtctctctatgtctctctgtgtgtctctc 384

                                                                       
Query: 184 tgtgtctctctttctctctgtgtctctctgtgtctgtctgtctgtc------tctctctc 237
           ||||||||||||||||||||||||||||||||||||||||||||||      ||| ||| 
Sbjct: 385 tgtgtctctctttctctctgtgtctctctgtgtctgtctgtctgtctgtctgtctgtctg 444

                                                                       
Query: 238 tctctctctctctctctctctctcgtgtacagacataatatatatacctgtgcatatatg 297
           ||| ||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 445 tctgtctgtctctctctctctctcgtgtacagacataatacatatacctgtgcatatatg 504

                                                                       
Query: 298 gaggccacaaggtgatctgtcctatcactttctacctgattcccttgagattgggtcatg 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gaggccacaaggtgatctgtcctatcactttctacctgattcccttgagattgggtcatg 564

                                                                       
Query: 358 tagagactaggtcatttactgaacccggagctaagatggtggccaacaaacccccgtgat 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tagagactaggtcatttactgaacccggagctaagatggtggccaacaaacccccgtgat 624

                                                                       
Query: 418 cctcctgtctgctccccacagtgctgaggttacaaccatacatggtcatgcctgctattt 477
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 625 cctcctgtctgctccccacagtgctgaggttacaaccatacatggtcatgtctgctattt 684

                                                                   
Query: 478 atgtgaatgatagggatttgaactcaagtcctcaggaagtgctcttgtgcactgag 533
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 atgtgaatgatagggatttgaactcaagtcctcaggaagtgctcttgtgcactgag 740


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 934
Length adjustment: 10
Effective length of query: 523
Effective length of database: 924
Effective search space:   483252
Effective search space used:   483252
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)