Query= MSMg01no365_h05.b1 MSMg01no365_h05.b1 CHROMAT_FILE:
MSMg01no365_h05.b1 PHD_FILE: MSMg01no365_h05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:01:57 2005
(475 letters)
>mm_chrX_136545899_136546773
Length = 875
Score = 897 bits (464), Expect = 0.0
Identities = 470/472 (99%), Gaps = 1/472 (0%)
Strand = Plus / Minus
Query: 5 gaattctcgtttt-cctcattgatttttctcgatggtgattcggtttgcaatcctactgc 63
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 867 gaattctcgttttaactcattgatttttctcgatggtgattcggtttgcaatcctactgc 808
Query: 64 tcttagctggtgtctttactgcttcctccctttgcttgctttctgttgactttgtccttc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 807 tcttagctggtgtctttactgcttcctccctttgcttgctttctgttgactttgtccttc 748
Query: 124 ctctagttttctaaggtaggcacgtagactatttacttgagacctctccttgatttgaat 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 ctctagttttctaaggtaggcacgtagactatttacttgagacctctccttgatttgaat 688
Query: 184 ggtattcttttaaaagggcatttctcctaaatagcagtatgtttgaccccagctgtcatc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 ggtattcttttaaaagggcatttctcctaaatagcagtatgtttgaccccagctgtcatc 628
Query: 244 tccagccataatttcacaaatgattatttttattttcactgtcaaaattctacattgaga 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 tccagccataatttcacaaatgattatttttattttcactgtcaaaattctacattgaga 568
Query: 304 aacattcatacacagatatgccagaggtacctcaaattaaattaatttggtcaaaaacta 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 aacattcatacacagatatgccagaggtacctcaaattaaattaatttggtcaaaaacta 508
Query: 364 tttatgtcctagtttcctatattaagtctctctaccaacttgcaatgcacaaatatcata 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 tttatgtcctagtttcctatattaagtctctctaccaacttgcaatgcacaaatatcata 448
Query: 424 aatttcactttgaccattgttattttaattatgatcatgcaggtgctgttca 475
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 aatttcactttgaccattgttattttaattatgatcatgcaggtgctgttca 396
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 475
Length of database: 875
Length adjustment: 10
Effective length of query: 465
Effective length of database: 865
Effective search space: 402225
Effective search space used: 402225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no365_h05.g1 MSMg01no365_h05.g1 CHROMAT_FILE:
MSMg01no365_h05.g1 PHD_FILE: MSMg01no365_h05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:01:57 2005
(505 letters)
>mm_chrX_136354749_136355654
Length = 906
Score = 924 bits (478), Expect = 0.0
Identities = 499/506 (98%), Gaps = 1/506 (0%)
Strand = Plus / Plus
Query: 1 cttcattgcagtaagggtaaaggatggtgagaccacagacagaccaatgcagcccagatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttcattgcagtaagggtaaaggatggtgagaccacagacagaccaatgcagcccagatc 260
Query: 61 tgaggctagcctgatgtgtttctggtaggaaatcaagcagaccagagtatgtggcaaatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgaggctagcctgatgtgtttctggtaggaaatcaagcagaccagagtatgtggcaaatg 320
Query: 121 acaaagggctgctgagacaaagtagaggtatgcagtgggtcttgtaggacatttgtaaaa 180
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 321 acaaagggctgctgagacaaagtagaggtatgcagcgggtcttgtaggacatttgtaaaa 380
Query: 181 ggttagaattttggcaccaatgtcggtggtggtggtgctggtgatcagtaaagagctaac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggttagaattttggcaccaatgtcggtggtggtggtgctggtgatcagtaaagagctaac 440
Query: 241 caaacactagctcttgttactggagtggacagactcacacaagtgagtgtttctggaaga 300
|||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 441 caaacactaggtcttgttactggagtggacagactcacacaagtgagtctttctggaaga 500
Query: 301 agcagcctgcattgaaaagcatgggctggcaggacatggatcagg-aaagtctgtgcaga 359
||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct: 501 agcagcctgcattgaaaagcatgggctggcagggcatggatcagataaagtctgtgcaga 560
Query: 360 caggaagcaccggtaaggatgagttaagttttccatctttcttccccatttaagctccat 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 caggaagcaccggtaaggatgagttaagttttccatctttcttccccatttaagctccat 620
Query: 420 catctgcttcccctccccacactcatccaacattcactgatattcctcctctcccgggct 479
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 621 catctgcttcccctccccacactcatccaacattcactgatattcctcctctcacgggct 680
Query: 480 tccattcatactattcttatctgtgc 505
||||||||||||||||||||||||||
Sbjct: 681 tccattcatactattcttatctgtgc 706
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 906
Length adjustment: 10
Effective length of query: 495
Effective length of database: 896
Effective search space: 443520
Effective search space used: 443520
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
