XXXXXXXXXXXXXXXXXXXXXXXXXTTCCCAAGAGGATCCGCGGAATTCA
GAATTCTCAAGAGAGCAGAGTGAGAAATTGTTCAGGAGAATGCAGGTTCT
CTCAGAGGGAAACAAAGTGCTATGAATATGTGAGTGCAGCTTTGCACAGA
GGCCATTGTGCCTGTGAGTTCATGTTCCTGCTGAGGACAGATTGCAATGG
AGACAAAAGTGTAGGTGCCTGCTGATGTCTCGAGTTGAGGATTAACCTGT
TAGTGCAGGTGACTGCAGGGGCCAGGGAAGGGACCTGGGCAAATAAGTGC
AGGAGCCTTCTTAAGACTAGGTTATGTGGGGACAGTGGGCTATACACAGA
CAAGCTGGTCTCCAGTTGAGTTGAGGTCTGAACTCTAGTAGAACCTGATG
GGTGGCAATTCCCACCTACATGGGACAGAAGGTGTTCCCTCATGTCTTCT
GGCCCCCTGGCTCCTGTTGAATTTACCCCACATACCCCACAAGAGAGGAT
AGTGGCTAGCAGTCATGTACACAATGTCCCAAGCTTCTGACCTTCAGGCT
AGACTTCTCCCAGTTACCTAGCAACAACAAGATAACAAGTCCACTATAAG
AGGGGCTGCTTGGCCCACTCCTCACTCTTTTAAGCTTTTACTTTCTTTAG
TCTCTCTCTAAGCCCTCTCTCTCTAAGCCTTCACTTTTCTTACTCTCTAA
ATCTCTTTCCCTCCTTCCTTTTCCCCTTCTCTCCCGTTGG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXATCTTGGAAGATTTTACCTTTGATGAGTATGAAGTGCCTATCCT
TGTCTATTTTGATAAATTTGGGATGGAAGCCGATTTTATCCGATATTAGA
ATGACTACTCCAGCTTGTTTCTTCAGAACATTTGCTTGGAAAATTGTTTT
CCAACCTTTTACTCTAAGGGAGTGTCTGTCTTTTTCCCTGAAGTGAGTTT
CCTGTATCCAACAAAATGTTGGGTCCTATTACATAGCCAGTCTGTTAGTC
TGTCTTTTTATTAGGAGAATTGAGTCTGTTGATATTGAGAGATATTAAGG
AAAAGCAATTATGGCTTCTTGTTATTTTTGATGTTACATTTGGGGTTCTG
TTCTTGCGGCTGTCTTCTTTTAGTTTTGTTGAAGGATTACTTTCTTGCTT
TTTCTTTTTTTTTTGTTTTTTTTTTGTTTTTTTTTTGGTTTTTTTTGTTT
GTTTTTTTTTCCATTTTTTATTAAGTATTTAGCTCATTTACATTTCCTTT
TTTCCATTTTTATTANGTATTTAGCCCATTTACATTTCCAATGCTATACC
AAAAGTCCCCCATACCCACCAACCCCCAATTCCCTATCCACCCACTCCCC
CCTTTTTGGGCCTGGGGGTTCCCCTGGTACTGGAGCAATTAAAGTTTGCC
GGGCCCGGGGGGACCCCTCTTTCCAGG

Query= MSMg01no365_k14.b1 MSMg01no365_k14.b1 CHROMAT_FILE:
MSMg01no365_k14.b1 PHD_FILE: MSMg01no365_k14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:02:13 2005
         (529 letters)



>mm_chrX_4767987_4768915
          Length = 929

 Score =  913 bits (472), Expect = 0.0
 Identities = 517/534 (96%), Gaps = 6/534 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   agagcagagtgagaaattgttcaggagaatgcaggttctctcagagggaaacaaagtgct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agagcagagtgagaaattgttcaggagaatgcaggttctctcagagggaaacaaagtgct 260

                                                                       
Query: 61  atgaatatgtgagtgcagctttgcacagaggccattgtgcctgtgagttcatgttcctgc 120
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgaatatgtgtgtgcagctttgcacagaggccattgtgcctgtgagttcatgttcctgc 320

                                                                       
Query: 121 tgaggacagattgcaatggagacaa-aagtgtaggtgcctgctgatgtctcgagttgagg 179
           |||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct: 321 tgaggacagattgcaatggaga-aagaagtgtaggtgcctgctgatgtctcgagttgagg 379

                                                                       
Query: 180 attaacctgttagtgcaggtgactgcaggggccagggaagggacctgggcaaataagtgc 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 attaacctgttagtgcaggtgactgcaggggccagggaagggacctgggcaaataagtgc 439

                                                                       
Query: 240 aggagccttcttaagactaggttatgtggggacagtgggctatacacagacaagctggtc 299
           ||||||||||  |||||| ||||||||||||||| ||||||| |||||||||||||||||
Sbjct: 440 aggagccttcagaagacttggttatgtggggacattgggctaaacacagacaagctggtc 499

                                                                       
Query: 300 tccagttgagttgaggtctgaactctagtagaacctgatgggtggcaattcccacctaca 359
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 500 tccagttgagttgaggtctgaactctagtagaacttgatgggtggcaattcccacctaca 559

                                                                       
Query: 360 tgggacagaaggtgttccctcatgtcttctggccccctggctcctgttgaatttacc--- 416
           |||||||||||| ||||||| |||||||||||||||||||||||||||||| |||||   
Sbjct: 560 tgggacagaaggcgttcccttatgtcttctggccccctggctcctgttgaagttaccacc 619

                                                                       
Query: 417 -ccacataccccacaagagaggatagtggctagcagtcatgtacacaatgtcccaagctt 475
            |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 cccacattccccacaagagaggatagtggctagcagtcatgtacacaatgtcccaagctt 679

                                                                 
Query: 476 ctgaccttcaggctagacttctcccagttacctagcaacaacaagataacaagt 529
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ctgaccttcaggctagacttctcccagttacctagcaacaacaagataacaagt 733


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 929
Length adjustment: 10
Effective length of query: 519
Effective length of database: 919
Effective search space:   476961
Effective search space used:   476961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)