XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCAATTGTACTTCTACAGAGCAGTGCTTGACTGCCGAATGTTCTTCCTAA
TGATTGGTAAAGGTCTTAAAGAATTTTAATATTTCTCTTGAGTAATGTCA
TCTGGGTTCATGTACCAAATAAACAAAATAATATTCAACTGTTTCTGATA
AATGTATTTCTCTTTAAACTTTGTTTTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTATTTGCCACTGTCATTC
TCTTTATTTGACCCACATTTTCAGTTATTCGCCTTCTCTAAATAGAATTC
ATGAAATAGCCTATGAACTGTGAGTGCTTCTTCATTTTTTTTTGAAACTT
CTTTCTTGTAAGTATTCTTTTTAGTCTTCTTTGAGGCAGTGGGTCTCTGG
GGTACTCTAGTCAAGAGTATATTCCAGTCAAGAGTTTTTATAATTTGTAT
AGGATGCATCAGGAGATGATTCCCAGGCATAACACTCATAGTTGAATTTT
TGGTCAAACCAAGTTTTTCTGCTACTGGATAAGATGACTAGAATTGAATA
ACTAACTGTTCCAATGGCAGTGTAAGTCTGCACAGATGAAATTACCCTTA
GCATCACTGTCTTCCAAATTCCTACTGGAATGGAACATTAAGTCACATTT
GAATCATTTCCCTGTTTTCCCAATTCCCCATTGTCCACATTTCCTCGGAA
ATAA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCAGGGCCAGGAAGTGGGAGCAGGTAGATTGGGGAGCATGGAGG
GGGGACGGTATGGGGGCTTTGGAGATAGCATTTGAAATGTAAATGAAGAA
AATATCTAATAATTTTTTAAAATAAAAAATATTAGCCCTATATCGGATGT
AGGATTTGTAAAGATCTTTTCCCAATCTGTTGATTCTGTTTTTTTTTTTT
AAGTATCAGCTTTCTCTCTCTGTCTCTCTGACTCCCCCTCTCTCTCTGTC
TCTCTGTCTCTGTCTGTCTGTCTGTCTGTCTCTCTCTGTGTGTGTATGTG
TGTAATGTGTGGATCTTCATTTTTCATAATTAATGTGTCTGTTTTTATGC
CACCATGCAGTTCAAGATTCGTTTTTTACAATCTTGTTTTTTTTTCTTTT
GCTGTTGCTGTTTTTGTTTGTCCGCTTGACCGTCTGCCTGCCTCCCTTTC
CATATATAGTATGTTCCTTGTTTCTTTTCTTGTTGCATATACCACCTGCC
TTTTGCCTTACCCCTTTCTTGCCCCTTCATTTACCATAACCCCTTATCCC
ATTTCTTTAATAATACTATCTCCGCATGTATCTATTTTCGGTTGCATTAC
TTAACATATCGTACTTTCTTATTACCCTTGTTTCCCTATAAGCTCGACCA
TCCCCTAATAACTATGTGTTTTTAGTACCTACCCCCATTTCTTATTC

Query= MSMg01no365_l04.b1 MSMg01no365_l04.b1 CHROMAT_FILE:
MSMg01no365_l04.b1 PHD_FILE: MSMg01no365_l04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:02:16 2005
         (562 letters)



>mm_chrX_115002728_115003689
          Length = 962

 Score = 1052 bits (544), Expect = 0.0
 Identities = 558/568 (98%), Gaps = 10/568 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaattgtacttctacagagcagtgcttgactgccgaatgttcttcctaatgatt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 gaattccaattgtacttctacagagcagtgcttgactgccgaatgttcttcctaatgatt 254

                                                                       
Query: 65  ggtaaaggtcttaaagaattttaatatttctcttgagtaatgtcatctgggttcatgtac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 ggtaaaggtcttaaagaattttaatatttctcttgagtaatgtcatctgggttcatgtac 314

                                                                       
Query: 125 caaataaacaaaataatattcaactgtttctgataaatgtatttctctttaaactttgtt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 caaataaacaaaataatattcaactgtttctgataaatgtatttctctttaaactttgtt 374

                                                                       
Query: 185 ttctctctctctctctctctctctctctctctctctctctctctctctctctct----tt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||
Sbjct: 375 ttctctctctctctctctctctctctctctctctctctctctctctctctctctctcttt 434

                                                                       
Query: 241 ctatttgccactgtcattctctttatttgacccacattttcagttattcgccttctctaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 ctatttgccactgtcattctctttatttgacccacattttcagttattcgccttctctaa 494

                                                                       
Query: 301 atagaattcatgaaatagcctatgaactgtgagtgcttcttcattttttttt------ga 354
           ||||||||||||||||||||||||||||||||||||||||||||||||||||      ||
Sbjct: 495 atagaattcatgaaatagcctatgaactgtgagtgcttcttcatttttttttttttttga 554

                                                                       
Query: 355 aacttctttcttgtaagtattctttttagtcttctttgaggcagtgggtctctggggtac 414
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 aacttctttcttgtaagtattctttttagtcttctttgaggcagtgggtctctggggtac 614

                                                                       
Query: 415 tctagtcaagagtatattccagtcaagagtttttataatttgtataggatgcatcaggag 474
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 tctagtcaagagtatattccagtcaagagtttttataatttgtataggatgcatcaggag 674

                                                                       
Query: 475 atgattcccaggcataacactcatagttgaatttttggtcaaaccaagtttttctgctac 534
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 atgattcccaggcataacactcatagttgaatttttggtcaaaccaagtttttctgctac 734

                                       
Query: 535 tggataagatgactagaattgaataact 562
           ||||||||||||||||||||||||||||
Sbjct: 735 tggataagatgactagaattgaataact 762


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 93
Number of extensions: 28
Number of successful extensions: 28
Number of sequences better than 10.0: 1
Number of HSP's gapped: 18
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 962
Length adjustment: 10
Effective length of query: 552
Effective length of database: 952
Effective search space:   525504
Effective search space used:   525504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)