BAC Information

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BAC

Clone NameMSMg01-366B07
ChromosomeX (Build37)
Map Location 143,686,302 - 143,686,793
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666730, EG245663, Htr2c
Downstream geneIl13ra2, V1rb10, Lrch2, LOC100039462, LOC666789, LOC434863, EG623995, EG624023, LOC666184, LOC100039511, LOC666812, LOC100039519, LOC434864, EG624096
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-366B07.T7 (MSMg01no366_b07.b1)MSMg01-366B07.TJ (MSMg01no366_b07.g1)
ACCAG473882AG473883
length746748
length of high quality
(start - end)		499 (50 - 548)488 (84 - 571)
definitionCHROMAT_FILE: MSMg01no366_b07.b1 PHD_FILE: MSMg01no366_b07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:02:48 2005CHROMAT_FILE: MSMg01no366_b07.g1 PHD_FILE: MSMg01no366_b07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:02:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCCACTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGGA
TCCGCGGAATTCCATGCACATTTTATCATTAATTACAAGACAAAAATCTT
TCTTTACTGTGTGAATGCAGTCACCCTTAGCTGGAAGTTGGCAGACATGC
CATTCAGAAGTCATGAAGGAATTAATTTCATGTTTCATCCACCAAAAATA
AAATAAAATCTAGGGCAAAGTATGCGCTTCAGGGAACATCACTTGATGCT
TTAGATACAGTGAGAAAAAAACAATGGAAAAAGTCCAGAGCACTGAATCT
CAAATGCCTATGTACATTCTGTTCTGGATCAGTGGTATCATAACAACAGG
GGAATTTGTTTTTAAAAGAACCAGTACAACTGGAATTCTATGCCCTATGC
TAATCACTCATTCCAGTAGATAGTAATTTAATAGGGCTGGTGTTTATGTT
TCAATAATCTCGTGTCTCGGGTACTAAGTCAAACATAAGAAACAACATTC
CAGTGTATTTCATACAGTGGTTAGATCATCTTGGTTTATTTGAAAGGCAT
TGCCAGGGTAGAAAGAGAGCTAAATTTTGATACATAGAATAATTTCTTTA
AAAAAAAAATCAAGTAATTATAGCAAAAGAAATGCTCCATACTGACATAT
ATTAACTCAAGAACTTTTGTGGTTAAGGTTTATGGGAACAATATTATCAT
CCCTTTTCAACTTTTTTGCCAACAAATAAAGGTGCGGGATCAATAA

NNNNAAACAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTGACTTATGGAAAAA
TGAGTGTAACTCAAGAAGGAGGTGATCAGAGGCCTGATTTGTAGTTAAGC
TGTGTCAGCTATCAAACTGCTATGCTTTTTTAAATAAATTAGAGGATTTC
CAGATGGTATTTGTTACAGAACTGGTTGGTTACTGGAAGAAAAAAATGCC
TACATATTTGAATGACCAGAAATGAAGTACTTTGTATGGTTCTGATTGTG
TGAAAAATAGGGAAAATCCTTTGTTTTCATTTTCTAATTTTACTAGTTAT
GTGTACTTATTGCCTTCAAATTTTGCCCTGCCATTGTCTTTTGAACTTAC
ATTAATTTGTAGGGATTCAGAATTCTCCTATATGAGTTCACTTGTAGACA
GCATCACTCACCTTCTCCTTGCTAAGTCTAATAGACTATTCTCATGCTTT
GTGTTACCTAGCAGGAGTTTCTGATACCACCTGTCACTGATCTCATCCTG
GGACTAGTTTCTCCACTTGGGAGAAAGTGGGACACCACCAACTCTGAAGT
GCTGGCCTCTGCTTTAGCCCACTTTGCCCCTTCCTCCTCATATACTACCC
TCTCCCATATCTGAATATTCTAGGCCATGATACCCTCTATTCACCATTTT
TCTGGAACTTTATAGCTTATTTCCTTGTGCCCCCCAACAATCTCTGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no366_b07.b1 MSMg01no366_b07.b1 CHROMAT_FILE:
MSMg01no366_b07.b1 PHD_FILE: MSMg01no366_b07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:02:48 2005
         (499 letters)



>mm_chrX_143686095_143686993
          Length = 899

 Score =  944 bits (488), Expect = 0.0
 Identities = 491/492 (99%)
 Strand = Plus / Plus

                                                                       
Query: 8   gaattccatgcacattttatcattaattacaagacaaaaatctttctttactgtgtgaat 67
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 gaattccatgcacattttatcattaattacaagacaaaaatctttctttactgtgtgaat 267

                                                                       
Query: 68  gcagtcacccttagctggaagttggcagacatgccattcagaagtcatgaaggaattaat 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 gcagtcacccttagctggaagttggcagacatgccattcagaagtcatgaaggaattaat 327

                                                                       
Query: 128 ttcatgtttcatccaccaaaaataaaataaaatctagggcaaagtatgcgcttcagggaa 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 ttcatgtttcatccaccaaaaataaaataaaatctagggcaaagtatgcgcttcagggaa 387

                                                                       
Query: 188 catcacttgatgctttagatacagtgagaaaaaaacaatggaaaaagtccagagcactga 247
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 catcacttgatgctttagatacagtgagaaaaaaacaatggaaaaagtccagagcactga 447

                                                                       
Query: 248 atctcaaatgcctatgtacattctgttctggatcagtggtatcataacaacaggggaatt 307
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 atctcaaatgcctatgtacattctgttctggatcagtggtatcataacaacaggggaatt 507

                                                                       
Query: 308 tgtttttaaaagaaccagtacaactggaattctatgccctatgctaatcactcattccag 367
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 tgtttttaaaagaaccagtacaactggaattctatgccctatgctaatcactcattccag 567

                                                                       
Query: 368 tagatagtaatttaatagggctggtgtttatgtttcaataatctcgtgtctcgggtacta 427
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 568 tagatagtaatttaatagggctagtgtttatgtttcaataatctcgtgtctcgggtacta 627

                                                                       
Query: 428 agtcaaacataagaaacaacattccagtgtatttcatacagtggttagatcatcttggtt 487
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 agtcaaacataagaaacaacattccagtgtatttcatacagtggttagatcatcttggtt 687

                       
Query: 488 tatttgaaaggc 499
           ||||||||||||
Sbjct: 688 tatttgaaaggc 699


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 499
Length of database: 899
Length adjustment: 10
Effective length of query: 489
Effective length of database: 889
Effective search space:   434721
Effective search space used:   434721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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