BAC Information

Click to search

BAC

Clone NameMSMg01-367J19
ChromosomeX (Build37)
Map Location 140,289,328 - 140,289,830
singlet/doubletsinglet
Overlap genenone
Upstream geneAmmecr1, Rgag1, LOC209541, Chrdl1, Pak3, Capn6
Downstream geneDcx, LOC666628, LOC666633, LOC100039378, LOC100039243, Alg13, LOC100039407, Trpc5, LOC100039436, Zcchc16, LOC666655
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-367J19.T7 (MSMg01no367_j19.b1)MSMg01-367J19.TJ (MSMg01no367_j19.g1)
ACCAG475038AG475039
length772742
length of high quality
(start - end)		485 (48 - 532)503 (57 - 559)
definitionCHROMAT_FILE: MSMg01no367_j19.b1 PHD_FILE: MSMg01no367_j19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:04:49 2005CHROMAT_FILE: MSMg01no367_j19.g1 PHD_FILE: MSMg01no367_j19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:04:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAGAAGTTCTCTCATAATGTCTTGTCTTTCCTTCTACCATGCAC
ATCATGAGGATCAAACACAGATTAGCTGGCATAGCTACAGTTATCACTTA
TCTGTCTAGCCAGTCCCAATACTGTGCTGTAAAGCTGACTTAAAGGATTA
TGTATTCCCAAATGTACATGATATCATCACTATTGCCCCTGTTACCCATA
GAGTGAATACACTTCAGTTTTTAAGTGGTTCACCTCACCGAGAATCCATC
AAAGCCCAGTAGTTCAGAGGTAAATTGTACGGTCGTGGGAGCCCCTCTGT
TTAACTTCTTTTTCTTTTTCTTTTTTTGGCTTGCTTGTAGCTTTTTTTTT
AATTAGGTATTTTCCTCATTTACATTTCCAATGCTACCCCAAAAGTCTCC
CATACCCTCCCCCCCACTCCCCTACCCACCCACTCCCACTTTTTGGCCCT
GGCGTTCCTCTGTACTGGGGCATATAAAGTTTGCATGTCCAATGGGTCTC
TGTTTCTAGTGATGGTTGACTATGTCATCTTTTTGATACATATGCTGCTA
GAGTCAAGAATTCGGCTCTACTGGTTAGTTTTTAATGCTGTTCCCCCTAT
ATATTTGTAGATCCTTCTTACCCTCCCTTTTATTCCCCCCTATTTTCTCC
TTTCTGCCTCTTTTCGTTTCCCCCATCATCCCCTTTTTTTCTTTTTTCCT
TTTCTCCTGTTATTTTCCCCCT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXAAAAGAAAAGAGTTTTGATGAAGTCCTTGCAGGATTAGTTATCT
TAAATTTTGCTTGATTGGGATATTGAAAAAAATACCTATTTACTTCTCTG
ACCAAGTTTGGCAAAGAGAACGTTTTCAATCACTAAATTGGAAAAAAAGG
ATATGGTTTCAAATCTAAATATAGTCCTTTAAATTGAGTATGTTGCTTCT
GGAAATACACACATGCATACAATGTTCAACTGATTTTTCTCTTTCCACCA
GAGACTGATGAAGTTTTAAGGGATTTTTGTTTTGATTTAAAGAGACCCAA
TACATCTACATCTAACTTTTATTTGAATTAGGAATATCAAGAATTTCCAT
CTTGATCTACTTTGTCTCCACCAGACTGATGCTCGTGGACTCATTAAATA
TTTTATGAGGGAGGAATTCCTAATCCTCTCAGTCCTGGAGAGTGCCTTAG
GGGGGCTTCTTCAACAACGGTTATGTGTGCAATGTAAGGCTAGCCCTAAC
AGAATTGTGTGGATCATAGTGGTCCCAAGATCTCATCAGCCTCTTTTCTG
TGTGCTATTTTCTCCCAGACTTTTCCCCCACCTCGTCCCAAATCTCTTTG
TCGATGTGAGAAGTTAGTTATTATGGCCCCGGTTTATCCTGAATATAAAT
GAATTTAACATCCAAGGGGCCCCCTTTCCCGGATTGTGGTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no367_j19.g1 MSMg01no367_j19.g1 CHROMAT_FILE:
MSMg01no367_j19.g1 PHD_FILE: MSMg01no367_j19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:50 2005
         (503 letters)



>mm_chrX_140289128_140290030
          Length = 903

 Score =  957 bits (495), Expect = 0.0
 Identities = 501/503 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaagaaaagagttttgatgaagtccttgcaggattagttatcttaaattttgcttgatt 60
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaagaaaagagttttgacgaagtccttgcaggattagttatcttaaattttgcttgatt 260

                                                                       
Query: 61  gggatattgaaaaaaatacctatttacttctctgaccaagtttggcaaagagaacgtttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gggatattgaaaaaaatacctatttacttctctgaccaagtttggcaaagagaacgtttt 320

                                                                       
Query: 121 caatcactaaattggaaaaaaaggatatggtttcaaatctaaatatagtcctttaaattg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caatcactaaattggaaaaaaaggatatggtttcaaatctaaatatagtcctttaaattg 380

                                                                       
Query: 181 agtatgttgcttctggaaatacacacatgcatacaatgttcaactgatttttctctttcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtatgttgcttctggaaatacacacatgcatacaatgttcaactgatttttctctttcc 440

                                                                       
Query: 241 accagagactgatgaagttttaagggatttttgttttgatttaaagagacccaatacatc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 accagagactgatgaagttttaagggatttttgttttgatttaaagagacccaatacatc 500

                                                                       
Query: 301 tacatctaacttttatttgaattaggaatatcaagaatttccatcttgatctactttgtc 360
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 501 tacatctaacttttatttgaattaggaatatcaagaagttccatcttgatctactttgtc 560

                                                                       
Query: 361 tccaccagactgatgctcgtggactcattaaatattttatgagggaggaattcctaatcc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tccaccagactgatgctcgtggactcattaaatattttatgagggaggaattcctaatcc 620

                                                                       
Query: 421 tctcagtcctggagagtgccttaggggggcttcttcaacaacggttatgtgtgcaatgta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tctcagtcctggagagtgccttaggggggcttcttcaacaacggttatgtgtgcaatgta 680

                                  
Query: 481 aggctagccctaacagaattgtg 503
           |||||||||||||||||||||||
Sbjct: 681 aggctagccctaacagaattgtg 703


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 903
Length adjustment: 10
Effective length of query: 493
Effective length of database: 893
Effective search space:   440249
Effective search space used:   440249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |