Query= MSMg01no372_h14.b1 MSMg01no372_h14.b1 CHROMAT_FILE:
MSMg01no372_h14.b1 PHD_FILE: MSMg01no372_h14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:13 2005
(560 letters)
>mm_chrX_138615597_138616556
Length = 960
Score = 1044 bits (540), Expect = 0.0
Identities = 552/556 (99%)
Strand = Plus / Minus
Query: 5 gaattctttgtgtgcctcaagacattgctccaaagatatatctttagagaattcaaagaa 64
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 gaattctttgtgtggctcaagacattgctccaaagatatatctttagagaattcaaagaa 583
Query: 65 aggtttgagcatccaaatacctgtagattctcttaaggcatttgttttgtaggaactagg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 aggtttgagcatccaaatacctgtagattctcttaaggcatttgttttgtaggaactagg 523
Query: 125 tcatttaagaactcaaatttggctgggttgtatgtgtattgtgtgtgtgtgtgtttttaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 tcatttaagaactcaaatttggctgggttgtatgtgtattgtgtgtgtgtgtgtttttaa 463
Query: 185 aaatccatcttataagttactgggtgcattaaaaattgagaggtagtggctctagttcca 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 aaatccatcttataagttactgggtgcattaaaaattgagaggtagtggctctagttcca 403
Query: 245 aagcaaaactttctaggagtatttaaaaactgtaaagaaagcttttgaaaacacatgaag 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 aagcaaaactttctaggagtatttaaaaactgtaaagaaagcttttgaaaacacatgaag 343
Query: 305 caatacggtaatgccaaagacgagtcattgaatgtagttaagcacacttagttcctgaga 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 caatacggtaatgccaaagacgagtcattgaatgtagttaagcacacttagttcctgaga 283
Query: 365 ttaaaggttccatagaagcatgtataattaatatttaccagtggtgataggacttttgct 424
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 ttaaaggttccaaagaagcatgtataattaatatttaccagtggtgataggacttttgct 223
Query: 425 tttcttcaaggagctcagaatgcttgccaggcattatctaattaaactactcaatgtacc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 tttcttcaaggagctcagaatgcttgccaggcattatctaattaaactactcaatgtacc 163
Query: 485 tgtgaaatgcattggaatctgcattttatagatgtgggcactgaagcacaagtgtgctta 544
|||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct: 162 tgtgaaatgcattggaatctgcattttaaagatgtgggcactgaagcacaagtgggctta 103
Query: 545 aactaaactcatttag 560
||||||||||||||||
Sbjct: 102 aactaaactcatttag 87
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 960
Length adjustment: 10
Effective length of query: 550
Effective length of database: 950
Effective search space: 522500
Effective search space used: 522500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no372_h14.g1 MSMg01no372_h14.g1 CHROMAT_FILE:
MSMg01no372_h14.g1 PHD_FILE: MSMg01no372_h14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:13 2005
(456 letters)
>mm_chr11_107073013_107073866
Length = 854
Score = 478 bits (247), Expect = e-139
Identities = 412/489 (84%), Gaps = 46/489 (9%)
Strand = Plus / Plus
Query: 1 tgtgggatttgtttgactgtttgtttttgagacagtgtctcaaataactcaggctggcct 60
|||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct: 189 tgtgggttttgtttga----ttgttcttgagacagtgtctcaaataactcaggctggcct 244
Query: 61 caaactctgtatgtagctgaggttgaccctgaccttctggtcctactgcccagttaacat 120
|||||||||||||||||||||||||||||||| |||||| |||| ||||| |||| |||
Sbjct: 245 caaactctgtatgtagctgaggttgaccctgaacttctgatcctcctgcctggttaccat 304
Query: 121 ggctgggatggaacccagggttccatagtagctgcaggaactctacccactgatctctgt 180
|||||||||||||||| |||||||| |||||||| || | ||||||||||||| | |||
Sbjct: 305 ggctgggatggaaccccgggttccacagtagctgtagcagctctacccactgagcggtgt 364
Query: 181 cctcagtccctcctgttt----------cgtttt---gttttgttttgttcggatttttt 227
|||||| ||||||||||| |||||| ||||| |||| || | ||||||
Sbjct: 365 cctcagcccctcctgttttgtttcctttcgtttttttgtttttttttttt-g--tttttt 421
Query: 228 ------cctaaatcatactttccttac--tcattatgacactgtgtggcacacgtcaggg 279
||||||||||||||| | || ||| ||||| ||||||||||||||| ||||
Sbjct: 422 gttttccctaaatcatacttttc--acattcactatgatgctgtgtggcacacgt-aggg 478
Query: 280 -ttcttgctatttgtgagattatttagccacatgcacagtggtctgagatc-aggaacac 337
|||||||||| |||||||||||||| ||||||||| | |||||||||| | ||||||
Sbjct: 479 gttcttgctatctgtgagattatttaaccacatgca---ttgtctgagatccaagaacac 535
Query: 338 atctgagtgaaggaggcagtcttttcctcatccagagaatt----------aaaaaaaaa 387
||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct: 536 atctgagtgaaggaggcagtcttttcctcgtccagagaattctttaaaaaaaaaaaaaaa 595
Query: 388 aaaagccacaaatgaaaacaaaggacccaaaaggatgttcaaaccgagttactctgattt 447
||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct: 596 aaaagccacaaatgaaaacaaaggacccaaagggatgttcagaccgagttactctgattt 655
Query: 448 gggtcgaca 456
||| |||||
Sbjct: 656 gggccgaca 664
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 854
Length adjustment: 10
Effective length of query: 446
Effective length of database: 844
Effective search space: 376424
Effective search space used: 376424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
