Query= MSMg01no373_n04.b1 MSMg01no373_n04.b1 CHROMAT_FILE:
MSMg01no373_n04.b1 PHD_FILE: MSMg01no373_n04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:52 2005
(531 letters)
>mm_chrX_163908843_163909773
Length = 931
Score = 984 bits (509), Expect = 0.0
Identities = 521/525 (99%), Gaps = 2/525 (0%)
Strand = Plus / Plus
Query: 8 gaattcttgtac-ctatctgtaccttttataatgacagctacatgagagtggggagagag 66
||||| |||||| | || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 gaatttttgtacac-atttgtaccttttataatgacagctacatgagagtggggagagag 266
Query: 67 acacttaggaaaataggagtttacatactccaagtgtaaacaaatttcagtgccagttcc 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 acacttaggaaaataggagtttacatactccaagtgtaaacaaatttcagtgccagttcc 326
Query: 127 atgttcttcaaaatttagtgaatgcaacgctacctgtgacggtatttgcatacatgcacc 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 atgttcttcaaaatttagtgaatgcaacgctacctgtgacggtatttgcatacatgcacc 386
Query: 187 aggcttatgcttgtttatttgtttatttatttatttaaaattatgtacatgtaccactgt 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 aggcttatgcttgtttatttgtttatttatttatttaaaattatgtacatgtaccactgt 446
Query: 247 actattatgccattataaaacatacacaaacataaaaaaactagataaaaataaacacaa 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 actattatgccattataaaacatacacaaacataaaaaaactagataaaaataaacacaa 506
Query: 307 gtatcattctagtatgttcttcctatactctaatggacatgaactccagttaggagcccc 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 gtatcattctagtatgttcttcctatactctaatggacatgaactccagttaggagcccc 566
Query: 367 atgcttaatgaaggtgagggggccttttgagatttttgaatagtaaagacttgctttagg 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 atgcttaatgaaggtgagggggccttttgagatttttgaatagtaaagacttgctttagg 626
Query: 427 agaacagaaacttactggagtagtcacaggaaattagagattggctagaaagacccagag 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 agaacagaaacttactggagtagtcacaggaaattagagattggctagaaagacccagag 686
Query: 487 ctatttccctgaggcttctcaaagaaccacaatggagtaggaagt 531
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 ctatttccctgaggcttctcaaagaaccacaatggagtaggaagt 731
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 931
Length adjustment: 10
Effective length of query: 521
Effective length of database: 921
Effective search space: 479841
Effective search space used: 479841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no373_n04.g1 MSMg01no373_n04.g1 CHROMAT_FILE:
MSMg01no373_n04.g1 PHD_FILE: MSMg01no373_n04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:52 2005
(546 letters)
>mm_chrX_164073356_164074301
Length = 946
Score = 973 bits (503), Expect = 0.0
Identities = 509/511 (99%)
Strand = Plus / Minus
Query: 36 gtttagtgcactattgtgaggtttctctggctagctttagggaagatgagttccagtccc 95
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 942 gtttagtgcactattgtgaggtttctctggctagctttagggaagatgagttccagtctc 883
Query: 96 tgtggcatccatggaggtggagtgagaagaacagaaaacaagggcagaagtacattatga 155
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 882 tgtggcatccatggaggtggagtgagaagaacagaaaacaagggcagaagtacattatga 823
Query: 156 ttttgaggccctttctatgtccttcattttgaactatgttgaatgctgaagcaccataca 215
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 822 ttttgaggccctttctatgtccttcattttgaactatgttgaatgctgaagcaccataca 763
Query: 216 ctggggtaccccaacacttctgattcaggcatctctgaaactgatggtgtgagatgaggt 275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 ctggggtaccccaacacttctgattcaggcatctctgaaactgatggtgtgagatgaggt 703
Query: 276 taagtgctagcagctttgctgggtgtctcaacgaacccaaagacatgacttgattattat 335
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 taagtgctagcagctttgctgggtgtctcaacgaacccaaagacatgacttgattattat 643
Query: 336 tgcatcctacacattagtgttccattaacataaaagtcatctcttaaacacattgaactg 395
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 642 tgcatcctacacattagtgttccattaacataaaagtcatctcttaaacacactgaactg 583
Query: 396 aactcaattagtctaattgattaccagcctagctgtagggattttgcagctttagggaaa 455
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 aactcaattagtctaattgattaccagcctagctgtagggattttgcagctttagggaaa 523
Query: 456 ctgacaaacatcttgccctttcagatcctacaattagattcacaagtgacagtcaataag 515
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 ctgacaaacatcttgccctttcagatcctacaattagattcacaagtgacagtcaataag 463
Query: 516 catttctcaggctccaaattcatcgtctata 546
|||||||||||||||||||||||||||||||
Sbjct: 462 catttctcaggctccaaattcatcgtctata 432
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 946
Length adjustment: 10
Effective length of query: 536
Effective length of database: 936
Effective search space: 501696
Effective search space used: 501696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
