Query= MSMg01no375_i04.b1 MSMg01no375_i04.b1 CHROMAT_FILE:
MSMg01no375_i04.b1 PHD_FILE: MSMg01no375_i04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:15:07 2005
(555 letters)
>mm_chrX_109056184_109057138
Length = 955
Score = 1021 bits (528), Expect = 0.0
Identities = 546/552 (98%)
Strand = Plus / Plus
Query: 4 ggaattcgttacttttactatgccagtattagccagctttgtatgatgtttcatatattt 63
|||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||
Sbjct: 204 ggaattcgttacttccattatgccagtattagccagctttgtatgatgcttcatatattt 263
Query: 64 gaaagtttttagtaaaacattagacattttaaaatccattttggaatattactcatcttg 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gaaagtttttagtaaaacattagacattttaaaatccattttggaatattactcatcttg 323
Query: 124 aattactaggtaaaaggatgaaaaactttcttcatttactttcatggtagatctatttca 183
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aattagtaggtaaaaggatgaaaaactttcttcatttactttcatggtagatctatttca 383
Query: 184 taaagcacactaaaaatttcctgttcaatcaatcagagaagaagtattttcagatactga 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 taaagcacactaaaaatttcctgttcaatcaatcagagaagaagtattttcagatactga 443
Query: 244 gtctattcttttccactcagcactgtgaaatgtggagattactgcacagtgttctttaaa 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gtctattcttttccactcagcactgtgaaatgtggagattactgcacagtgttctttaaa 503
Query: 304 acatacttcgttccctaactcccaagttgctatgacaaatggttaaaaattttaactatg 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 acatacttcgttccctaactcccaagttgctatgacaaatggttaaaaattttaactatg 563
Query: 364 ttagaagaatgcaatgtgatttagatgatgacaaagcagatggtttactgctcagcaagt 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ttagaagaatgcaatgtgatttagatgatgacaaagcagatggtttactgctcagcaagt 623
Query: 424 ggaaggaaggaaagattagtaactgacttggtcttaagattcaagttcattcaagttcat 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ggaaggaaggaaagattagtaactgacttggtcttaagattcaagttcattcaagttcat 683
Query: 484 taagttcatttcaatgagcttagctttgaaaattttctaataatacagttaaaaatattt 543
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 684 taagttcatttcaatgagcttagctttgaaatttttctaataatacagttaaaaatattt 743
Query: 544 ttcatatcaagc 555
||||||||||||
Sbjct: 744 ttcatatcaagc 755
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 955
Length adjustment: 10
Effective length of query: 545
Effective length of database: 945
Effective search space: 515025
Effective search space used: 515025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no375_i04.g1 MSMg01no375_i04.g1 CHROMAT_FILE:
MSMg01no375_i04.g1 PHD_FILE: MSMg01no375_i04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:15:07 2005
(595 letters)
>mm_chrX_109188046_109189040
Length = 995
Score = 677 bits (350), Expect = 0.0
Identities = 416/468 (88%), Gaps = 49/468 (10%)
Strand = Plus / Minus
Query: 168 atcataattcttatggcagcctatgttataaagagacttcctgcttataacatataaaac 227
|||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 995 atcataattcttatggcagcctatgttataaagagacttcctgcttat---------aac 945
Query: 228 atataaaacacacacacaaacagacacatatatatacat--atata--tatatatttatg 283
|||||||||||||||||||||| |||||||||||||||| ||||| ||||||| ||||
Sbjct: 944 atataaaacacacacacaaacacacacatatatatacatacatatatgtatatatgtatg 885
Query: 284 tatatatat------------------------------------acacacacacacata 307
||||||||| |||||||||||||||
Sbjct: 884 tatatatatatatatatatatatatatatatatacacacacacacacacacacacacata 825
Query: 308 catatatgtgtgtgtattatatatgtatacacaaaccaaaaggggggaactacaacagag 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 824 catatatgtgtgtgtattatatatgtatacacaaaccaaaaggggggaactacaacagag 765
Query: 368 tagatgataggaatgtgaaaatgaaacatgaattatgactgaactaattccagtctaata 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764 tagatgataggaatgtgaaaatgaaacatgaattatgactgaactaattccagtctaata 705
Query: 428 agaaattatggaagtttagtttgagacttatgttgagatcttcaactatgaaactattca 487
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 agaaattatgaaagtttagtttgagacttatgttgagatcttcaactatgaaactattca 645
Query: 488 ctgccacaaagaaataggaaaataaaaataaatactagatcattctagtaacagcatgct 547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 ctgccacaaagaaataggaaaataaaaataaatactagatcattctagtaacagcatgct 585
Query: 548 ttttataaggactggaaatatgccttcacactctatgtaaaattttga 595
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 ttttataaggactggaaatatgccttcacactctatgtaaaattttga 537
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 47
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 995
Length adjustment: 10
Effective length of query: 585
Effective length of database: 985
Effective search space: 576225
Effective search space used: 576225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
