BAC Information

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BAC

Clone NameMSMg01-375L13
ChromosomeX (Build37)
Map Location 48,551,899 - 48,723,050
singlet/doubletdoublet
Overlap geneMbnl3, LOC665866, LOC385356
Upstream geneEG665816, Olfr1324, LOC100041788, 6720401G13Rik, 2610018G03Rik, LOC100040422, Rap2c, LOC385355
Downstream geneHs6st2, Usp26, LOC100040479, LOC665888, 1700080O16Rik, LOC100040495, Gpc4, Gpc3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-375L13.T7 (MSMg01no375_l13.b1)MSMg01-375L13.TJ (MSMg01no375_l13.g1)
ACCAG481207AG481208
length769747
length of high quality
(start - end)		490 (71 - 560)528 (78 - 605)
definitionCHROMAT_FILE: MSMg01no375_l13.b1 PHD_FILE: MSMg01no375_l13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:15:24 2005CHROMAT_FILE: MSMg01no375_l13.g1 PHD_FILE: MSMg01no375_l13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:15:24 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,722,561 - 48,723,050)(48,551,899 - 48,552,426)
sequence
NNCCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCACTTTCTTTCGGTTTTTTTTTCTTGGCTGGCAGCTAGCAGCT
GGCAGCTGGCAGCCACTCTCCAAGGAATCATGTCAAAGGCTGGGGTGAGC
AGCAAGAGAAGTAACTAGGAAATTGTGGTTTTCTTTCCATCACCCTCCTT
TGTTGCCTTTCCAGATTTAAGATTGTTTTGCACTTGGCTTTTCAGGTCCT
TTCTCAGCTTAGGACGTTCCAAACAGCACATATTTACTATTGTGTACTTC
TTAGTGCTTGCCATTTGAACTCCATGCTCTGGCTAGATTTTGGACATTTG
GAAAAGCATTTCAAGTTGCTTTCCAGGACTTTAGGGAAATAGCACCAGAG
CTAACTCCATCTTTTGCTATCTTTTCCTCTTCTTTCTTCCCAAGGACTAC
TAATGACAGAATCTATTTCAGAACCCATAAAACTGTCATTGTTTCCCTGT
TGACCATCTGGGGTTTTCTCTCCTGGCTTTTGGCTCCTTCTAGTGTTTTC
CCTCCTAATTGCCATGTCCGTAATGCTCTTGATTTCAGAGACTCCTGTAT
GTTCCCTTACCATGGCAGCATTCCATTAGGGTGCCATCCCCCTTTCCACC
CTTATTAATTGACCCTTCCCAGGCAAAGGGGAAAAACCCCTTGCCCTGGA
GGAAAAGGCATTCTTCTTCCGCTGAATACTCTCCCCCCCCTTGGTGTGGG
CGGTAATTTTATAAACAAT

NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCATCAATTACAGACAGCAAGAC
TTTTCAAAAGCATCACTGTGCCCTTTAGTAACAGTATGTGCATTCATCCC
ACTGGCTGAGCAAGCACATAGGTACAAGCACATAGGTACAAGCACATAGG
TACAAGCACAAAGGCAAACCCTTGATGCTAGTACTGAGGTGAGATATGAG
CTTCATGCGTGGGTCCTGTGGACTATATCTCTACATAATTTAAACAGAAC
TCAGAAGAACACCTTTGTGATATACAAGTCTAATATTTTTGTCTTCTTTT
AAAAACCACCTCAATAGAGCATATTAATTATACAAAACAATATATTTCAT
TATTACACTTCTATACACACATAAAATGTCATGTACATTCCCTATTACCA
TTCTCTTTCTCATATTGCCCCTCTCCATCTCCTTTCGCCTTTCCTAATTA
GTTCCCCAAGTACTTCTATACTTTTTTCTAGATCACAAATCTAAGCTATT
TTACAACTTGTTTTTATTCTTTTTAATTATGGATACACATAACTATGGGT
GGACGTGTGTCCTAGAGTGCAGGAGCCTGAGTTGGCCAGGTGTGGCTTGG
AGCTTACTGATGCTGGTTCTGGGAACCAGCGCATGTCCTCTTCTAACTGT
TATGGGCGCTGCCCCACTGAGCCATTTCTCCTTTATCCTTACACAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no375_l13.b1 MSMg01no375_l13.b1 CHROMAT_FILE:
MSMg01no375_l13.b1 PHD_FILE: MSMg01no375_l13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:15:24 2005
         (490 letters)



>mm_chrX_48722361_48723250
          Length = 890

 Score =  917 bits (474), Expect = 0.0
 Identities = 486/490 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttttttttcttggctggcagctagcagctggcagctggcagccactctccaaggaatca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 tttttttttcttggctggcagctagcagctggcagctggcagccactctccaaggaatca 631

                                                                       
Query: 61  tgtcaaaggctggggtgagcagcaagagaagtaactaggaaattgtggttttctttccat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 tgtcaaaggctggggtgagcagcaagagaagtaactaggaaattgtggttttctttccat 571

                                                                       
Query: 121 caccctcctttgttgcctttccagatttaagattgttttgcacttggcttttcaggtcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 570 caccctcctttgttgcctttccagatttaagattgttttgcacttggattttcaggtcct 511

                                                                       
Query: 181 ttctcagcttaggacgttccaaacagcacatatttactattgtgtacttcttagtgcttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 ttctcagcttaggacgttccaaacagcacatatttactattgtgtacttcttagtgcttg 451

                                                                       
Query: 241 ccatttgaactccatgctctggctagattttggacatttggaaaagcatttcaagttgct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 ccatttgaactccatgctctggctagattttggacatttggaaaagcatttcaagttgct 391

                                                                       
Query: 301 ttccaggactttagggaaatagcaccagagctaactccatcttttgctatcttttcctct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 ttccaggactttagggaaatagcaccagagctaactccatcttttgctatcttttcctct 331

                                                                       
Query: 361 tctttcttcccaaggactactaatgacagaatctatttcagaacccataaaactgtcatt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 tctttcttcccaaggactactaatgacagaatctatttcagaacccataaaactgtcatt 271

                                                                       
Query: 421 gtttccctgttgaccatctggggttttctctcctggcttttggctccttctagtgttttc 480
           ||||||||||||||||||||||||||||| |||||||||||||||||||||||  |||||
Sbjct: 270 gtttccctgttgaccatctggggttttctttcctggcttttggctccttctagcattttc 211

                     
Query: 481 cctcctaatt 490
           ||||||||||
Sbjct: 210 cctcctaatt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 890
Length adjustment: 10
Effective length of query: 480
Effective length of database: 880
Effective search space:   422400
Effective search space used:   422400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no375_l13.g1 MSMg01no375_l13.g1 CHROMAT_FILE:
MSMg01no375_l13.g1 PHD_FILE: MSMg01no375_l13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:15:24 2005
         (528 letters)



>mm_chrX_48551699_48552626
          Length = 928

 Score = 1013 bits (524), Expect = 0.0
 Identities = 527/528 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcatcaattacagacagcaagacttttcaaaagcatcactgtgccctttagtaacagtat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcatcaattacagacagcaagacttttcaaaagcatcactgtgccctttagtaacagtat 260

                                                                       
Query: 61  gtgcattcatcccactggctgagcaagcacataggtacaagcacataggtacaagcacat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgcattcatcccactggctgagcaagcacataggtacaagcacataggtacaagcacat 320

                                                                       
Query: 121 aggtacaagcacaaaggcaaacccttgatgctagtactgaggtgagatatgagcttcatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggtacaagcacaaaggcaaacccttgatgctagtactgaggtgagatatgagcttcatg 380

                                                                       
Query: 181 cgtgggtcctgtggactatatctctacataatttaaacagaactcagaagaacacctttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cgtgggtcctgtggactatatctctacataatttaaacagaactcagaagaacacctttg 440

                                                                       
Query: 241 tgatatacaagtctaatatttttgtcttcttttaaaaaccacctcaatagagcatattaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgatatacaagtctaatatttttgtcttcttttaaaaaccacctcaatagagcatattaa 500

                                                                       
Query: 301 ttatacaaaacaatatatttcattattacacttctatacacacataaaatgtcatgtaca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 501 ttatacaaaacaatatatttcattattacacttctatacacacataaaatgtcatgtgca 560

                                                                       
Query: 361 ttccctattaccattctctttctcatattgcccctctccatctcctttcgcctttcctaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttccctattaccattctctttctcatattgcccctctccatctcctttcgcctttcctaa 620

                                                                       
Query: 421 ttagttccccaagtacttctatacttttttctagatcacaaatctaagctattttacaac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttagttccccaagtacttctatacttttttctagatcacaaatctaagctattttacaac 680

                                                           
Query: 481 ttgtttttattctttttaattatggatacacataactatgggtggacg 528
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttgtttttattctttttaattatggatacacataactatgggtggacg 728


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 528
Length of database: 928
Length adjustment: 10
Effective length of query: 518
Effective length of database: 918
Effective search space:   475524
Effective search space used:   475524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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