NCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTTAGAAGTCCCAAGGGATCTAGCACCTTTGAAGTCTACCAAA
TTTTCATATCTGTTGAGGCATGTCTAGGCCTTTCACTATATGCTCAACAG
TCTATCCAGCAGTCATCATCTTCCCAAAAGATTCTGGGAACATCAGAGTG
TGCCAAGTGTATTCATTAACATTTTTCTTTCGTCTCAGGTTCTTTGGGAA
TGTATTCATGTGTCCTATGGATGACAGGAACATTGCTACAAGTCCCAAAG
CCTATTGGACATTCCTCACCAATACAAGCATGTCAATCCCCTCCACCATC
TATGAAAAGAAACTGTGAAAACCTGTATTCACAAGCAACTCTTGTAGCAT
AAATCTCTCCATTGTTCTTACCATCTACTCAGGTGAATGGACAAGCTTAC
CTCAATCAAGAATCTACTTTGGGACAGCCCATAGCTGCCCAGGGAGTTCA
ACAACTTTTGTTGTCCAGCCCAGGTTATAAAGAAAGTGACAAGCAGGAAA
TAGGAATTTTTCCATCTTACCAAGTACTTCTGGGAATTTCCTTACCTGCA
GAGGGAATGGTAGGATCATGACCATCTGTACNAAGGGTTCTGGGAACTTC
CCTATCTGTCCCAGAATCTCTGTTCCACCCCAACAAGAACCTGTAGGTAC
TCTGCATCTCTAAAAAAGTCTTTCAATATCAATCTACCCCCTAA

NCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTGTTCAGTTCTGAGCCACATTTTTG
TATGGGGGTTATTTGATTTTCTGAAGTCCACCTTCTTGAGTTCTTTATAT
ATGTTGGATATTAGTCCCCTATCTGATTTAGGATAGGTAAAGATCCTTTC
CCGATCTGTTGGTGGTCTTTTTGTCTTATTGATGGTGTCTTTTGCCTTGC
AGAAACTTTGGAGTTTCATTAGGTCCCATTTGTCAATTCTCGATCTTACA
GCACAAGCCATTTCTGTTCTGTTCAGGAATTTTTCCCCTGTGCCCATATC
TTCAAGGCTTTTCCCCCCTTTCTCCTCTATAAATTTCAGTGTCTCTGGTT
TTATGTGAAGTTCCTTGATCCACTTAGATTTGACCATATTACAAGGAGAT
AAGCATGGATCGATTCGCATTCTTCTACATGATTACAACTAGTTGTGCCA
GCACCAATTGTTGAAAATGCTGTCTTTCTTCCACTGCAAGGTTTTAGCTC
CCTTGTCGAATATCAAGTGACCATAGGTGTGTGGGTTCATTTCTGGGTCT
TCAATCTGTTCCATTGGTCTACGTGTCTGTCTCTATACCGTACCTTGCCG
TTTTTATCACATTTGCTCTGTACTAAAGCTTATGTTATGCCTGGTCGATT
CCTCCAAATGGTCTTGTTTTTTC

Query= MSMg01no376_d15.b1 MSMg01no376_d15.b1 CHROMAT_FILE:
MSMg01no376_d15.b1 PHD_FILE: MSMg01no376_d15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:16:04 2005
         (549 letters)



>mm_chrX_143699193_143700146
          Length = 954

 Score =  321 bits (166), Expect = 8e-92
 Identities = 465/584 (79%), Gaps = 58/584 (9%)
 Strand = Plus / Plus

                                                                       
Query: 8   ttctttagaagtcccaagggatctagcacctttg--aagtctaccaaa-ttttcatatct 64
           |||||| | |||| ||||||||||| ||| ||||  |  ||||||||| ||||| |||||
Sbjct: 208 ttctttggtagtctcaagggatctatcacatttgcta--tctaccaaacttttcgtatct 265

                                                                       
Query: 65  gttgaggcatgtctaggcct---ttcactatatgctcaacagtctatccagcagtcatca 121
           ||| |||||  ||| || ||   |||| || |  ||||||||||||||||||||||||||
Sbjct: 266 gttcaggcaactctgggtctgtcttca-taca--ctcaacagtctatccagcagtcatca 322

                                                                       
Query: 122 tcttccc-aaaagattctgggaacatc-agagtgtgccaagtgtattcattaacattttt 179
           ||||||  ||||||||||||||||||| | | | | || |||||| |||| ||||||| |
Sbjct: 323 tcttcctgaaaagattctgggaacatcca-acttttcccagtgtactcataaacatttgt 381

                                                                       
Query: 180 ctttcgtctcaggttctttgggaatgtattcatgtgt-cctatgga-tgacaggaacatt 237
           |||| |||||||| ||||| ||||||| ||||||||| || | | | || ||||||||||
Sbjct: 382 ctttggtctcaggatctttaggaatgtcttcatgtgtgccaaag-actg-caggaacatt 439

                                                                       
Query: 238 gctacaagtcccaaagcctattggacattcctcaccaatacaagcatgtcaatcccctcc 297
           || ||| | |||||||||| || | ||||||||||||| ||||||| |||||||||||||
Sbjct: 440 gccacatgccccaaagcctcttagccattcctcaccaacacaagcaagtcaatcccctcc 499

                                                                       
Query: 298 accatctatg--aaaagaaactgtga-aaa---cctgtattcacaagcaactcttgtagc 351
           ||||||| ||  |||||   |||||  |||   ||||||| ||||||||||||||| |||
Sbjct: 500 accatctttgcaaaaag---ctgtggcaaatgccctgtatccacaagcaactcttg-agc 555

                                                                       
Query: 352 ataaat-c-tctcca-----ttgttc-ttac------catctactcaggtgaatggacaa 397
            | ||| | ||  ||     || ||| ||||      ||||||||||||||  |||||||
Sbjct: 556 -tgaatgcatcagcacaaattttttcattacactcaccatctactcaggtgcctggacaa 614

                                                                       
Query: 398 gcttacctcaat-caagaatctactttgggacagcccatagctgcccagggagttcaaca 456
           || | ||| ||| || ||| | |||||||||||| |||||||||| | ||||||| || |
Sbjct: 615 gcctcccttaatgca-gaaaccactttgggacagaccatagctgcacggggagttgaaga 673

                                                                       
Query: 457 acttttg--ttgtccagcccagg---------ttataaagaaagtgacaagcaggaaata 505
           |||||||  ||  | | ||||||         ||||||||||||||||||||||||| ||
Sbjct: 674 acttttgcctt--caaacccagggactctaggttataaagaaagtgacaagcaggaacta 731

                                                       
Query: 506 ggaatttttccatcttaccaagtacttctgggaatttccttacc 549
           |||||||||||||||  |||||| | |||||||||||| |||||
Sbjct: 732 ggaatttttccatctgcccaagtgcctctgggaatttctttacc 775


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 954
Length adjustment: 10
Effective length of query: 539
Effective length of database: 944
Effective search space:   508816
Effective search space used:   508816
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)