Query= MSMg01no376_l23.b1 MSMg01no376_l23.b1 CHROMAT_FILE:
MSMg01no376_l23.b1 PHD_FILE: MSMg01no376_l23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:16:43 2005
(420 letters)
>mm_chrX_101872968_101873788
Length = 821
Score = 733 bits (379), Expect = 0.0
Identities = 407/421 (96%), Gaps = 12/421 (2%)
Strand = Plus / Plus
Query: 4 ggaattcttgggactt---gcaggtctcctctggagggaaggtaatggagctttcggggt 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcttgggac--ccagcaggtctcctctggagggaaggtaatggagctttcggggt 261
Query: 61 gggggcggcaggcagtgtgcagctcacttctgctggctgtgtcccagatgtaccttcttt 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tggggcggcaggcagtgtgcagctcacttctgctggctgtgtcccagatgtaccttcttt 321
Query: 121 atttggtgttggtgctacagtaatactggcttcataaaatgaatttggtaatgttactac 180
||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 322 atttggtgttg---ctacagtaatactggcttcataaaatgaatttggtattgttactac 378
Query: 181 tacctttcctattttctagactaatatgagaagtgtcgttagttctttttttt-atattt 239
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 379 ---ctttcctattttctagactaatatgagaagtgtcgttagttctttttttttatattt 435
Query: 240 attggccatttgtaattcaccttttaataactgtctatttgtttcattagctcatttaac 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 attggccatttgtaattcaccttttaataactgtctatttgtttcattagctcatttaac 495
Query: 300 gattgggtcatttgatgtttaggttcttttgagccctttgttcttctgagtcaaggtttc 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 gattgggtcatttgatgtttaggttcttttgagccctttgttcttctgagtcaaggtttc 555
Query: 360 tctgtgtaatgtctccagctatcctggaactcaatctatagtccaagctggccacagact 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 tctgtgtaatgtctccagctatcctggaactcaatctatagtccaagctggccacagact 615
Query: 420 c 420
|
Sbjct: 616 c 616
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 420
Length of database: 821
Length adjustment: 9
Effective length of query: 411
Effective length of database: 812
Effective search space: 333732
Effective search space used: 333732
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no376_l23.g1 MSMg01no376_l23.g1 CHROMAT_FILE:
MSMg01no376_l23.g1 PHD_FILE: MSMg01no376_l23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:16:43 2005
(438 letters)
>mm_chrX_102055005_102055842
Length = 838
Score = 555 bits (287), Expect = e-162
Identities = 297/301 (98%), Gaps = 2/301 (0%)
Strand = Plus / Minus
Query: 140 tggagcatatagacatgccctgactgcagatggcatcattctgtggactgaggtcctgag 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 838 tggagcatatagacatgccctgactgcagatggcatcattctgtggactgaggtcctgag 779
Query: 200 attaataaaaaggaaaa--aaatgagcaggcatttctctctatttcctaatttcagtccc 257
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 attaataaaaaggaaaaataaatgagcaggcatttctctctatttcctaatttcagtccc 719
Query: 258 tcaaactgtgaaccaagaacaaacccctctttccttacatccctttgttgggtatttcat 317
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 tcaaactgtgaaccaagatcaaacccctctttccttacatccctttgttgggtatttcat 659
Query: 318 cagagtaatgaagaaagcaataaatattgtgtatttatttcctatgacctaatgccttct 377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 cagagtaatgaagaaagcaataaatattgtgtatttatttcctatgacctaatgccttct 599
Query: 378 gcccttggataaagcagggtattgtaaaagagataagcagttcctggtatctaactgatg 437
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 598 gcccttggataaagcagggtattgtaaaagagataggcagttcctggtatctaactgatg 539
Query: 438 c 438
|
Sbjct: 538 c 538
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 438
Length of database: 838
Length adjustment: 9
Effective length of query: 429
Effective length of database: 829
Effective search space: 355641
Effective search space used: 355641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
