BAC Information

Click to search

BAC

Clone NameMSMg01-377M04
ChromosomeX (Build37)
Map Location 67,583,279 - 67,583,720
singlet/doubletsinglet
Overlap genenone
Upstream geneAff2, EG666577, 1700020N15Rik
Downstream geneIds, 1110012L19Rik, 4930567H17Rik, LOC100040304, LOC628002, LOC628012, BC023829, EG547447, LOC666981, LOC100040409, LOC628053, LOC100040432, EG280121, LOC666993, Ppia-psx_466.1, EG628080, G630014P10Rik, LOC667013, Mtm1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-377M04.T7 (MSMg01no377_m04.b1)MSMg01-377M04.TJ (MSMg01no377_m04.g1)
ACCAG482766AG482767
length748745
length of high quality
(start - end)
429 (75 - 503)442 (82 - 523)
definitionCHROMAT_FILE: MSMg01no377_m04.b1 PHD_FILE: MSMg01no377_m04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:18:03 2005CHROMAT_FILE: MSMg01no377_m04.g1 PHD_FILE: MSMg01no377_m04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:18:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAGGATTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTCACCTGTATCGCATACCGAAAGGCTGAGAAACACCTGAA
AAAATGTTCAACATCCTTAATCATCAGAGAAATGCAAATCAAAACAACCC
TGAGATTCCATCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGT
GACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTG
TTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGTGGT
TCCTCAGAAAATTGGACATAGTACTACCGGATGATCCCGCAATACCTCTC
CTGGGCATATATCCAGAAGATGTCCCAACCGGTAAGAAGGACACATGCTC
CACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAAC
CCAGATGTCCCTCAACAGAGGAATGGATACAAAAAAATGTGGTACATCTA
CACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTCACGAAATTCC
TAACCAAATGGATGGACCTGGAGGGTGTCCTCTTGAGTGAGGTAACCCAA
TCACAATAGAACTCAAATGATATGTACTCCCCCGATTATTGCATATTACC
CCCGAACCCTACTTTATTTAGATACCATGTACTATATGCTCATATTACGC
CACTGTACCAACAATTACTTACCCCCCGTGTTCCCCCTCGCCCCCTCN
NTTCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAGTCCAGGGGTTTAAAGA
CACTGTTATGAATTAATATGAATAAAATATTCGGTAGATTAAGCGAAGGT
CCTGGCTCTCCTGGGGTTGTTTTCTAACTGCTAACATGCTTTATACCCCT
CTGCGACTGGGTCCTTTTTGCAGCCCAGAGGCATAGGTTTTATCTATGGT
GAAAACGTCCTCCCCAAATGACACAAAGGTTGCTGCTGCAGCCTGTAGTA
TTTATACTTTTGTAAAACAGGATATTATGCTGTCTTCTCTGTCAGCCATT
ATTGGCAGCAAGTACCAGCCATCATGTGGACCAAAGAAACAAGCTTGCCT
GACTGAATGTTAGACACCTCATTAATATGATTTTTAGACAAGCAACAAAG
AATTTCTTGATATAATACATCCTAAATGTTGAATGAGTCATACCTACATA
GAATAATTCTTTATCTTCGTTTCCAATTTATCTTACTATCTAGCATTCTT
ATTGATAAAACCTGTTCTTTTTACCAGGAAGCATGTGGGGGTATTGGGAG
TTGCCCCGGGTCAATTTGGTTTCCGCACCCTTCAATTGGAATTAGCTTTA
GAAGGTCACCGGATTTTCGTCTCCCGTTCCACTTTATTTCCCACCATTTA
TCCCCTTTCTCTTTTCCCCCTTTTACCTTTTTCATCCCTCTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no377_m04.g1 MSMg01no377_m04.g1 CHROMAT_FILE:
MSMg01no377_m04.g1 PHD_FILE: MSMg01no377_m04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:18:03 2005
         (442 letters)



>mm_chrX_67583079_67583920
          Length = 842

 Score =  832 bits (430), Expect = 0.0
 Identities = 439/442 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tagtccaggggtttaaagacactgttatgaattaatatgaataaaatattcggtagatta 60
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 642 tagtccaggggtttaaagacactgttatgaattaacatgaataaaatattcggtagatta 583

                                                                       
Query: 61  agcgaaggtcctggctctcctggggttgttttctaactgctaacatgctttatacccctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 agcgaaggtcctggctctcctggggttgttttctaactgctaacatgctttatacccctc 523

                                                                       
Query: 121 tgcgactgggtcctttttgcagcccagaggcataggttttatctatggtgaaaacgtcct 180
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 tgggactgggtcctttttgcagcccagaggcataggttttatctatggtgaaaacgtcct 463

                                                                       
Query: 181 ccccaaatgacacaaaggttgctgctgcagcctgtagtatttatacttttgtaaaacagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 ccccaaatgacacaaaggttgctgctgcagcctgtagtatttatacttttgtaaaacagg 403

                                                                       
Query: 241 atattatgctgtcttctctgtcagccattattggcagcaagtaccagccatcatgtggac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 atattatgctgtcttctctgtcagccattattggcagcaagtaccagccatcatgtggac 343

                                                                       
Query: 301 caaagaaacaagcttgcctgactgaatgttagacacctcattaatatgatttttagacaa 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 342 caaagaaacaagcttgcctgactgaatgttagacacctcattaatatgatttttagacga 283

                                                                       
Query: 361 gcaacaaagaatttcttgatataatacatcctaaatgttgaatgagtcatacctacatag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 gcaacaaagaatttcttgatataatacatcctaaatgttgaatgagtcatacctacatag 223

                                 
Query: 421 aataattctttatcttcgtttc 442
           ||||||||||||||||||||||
Sbjct: 222 aataattctttatcttcgtttc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 442
Length of database: 842
Length adjustment: 9
Effective length of query: 433
Effective length of database: 833
Effective search space:   360689
Effective search space used:   360689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)