BAC Information

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BAC

Clone NameMSMg01-378E19
ChromosomeX (Build37)
Map Location 34,428,402 - 34,428,883
singlet/doubletsinglet
Overlap geneNkrf
Upstream geneDock11, Il13ra1, Zcchc12, LOC547166, Lonrf3, EG621901, Pgrmc1, B230333C21Rik, LOC621983, Slc25a43, Slc25a5, C330007P06Rik, Ube2a
Downstream geneSept6, Ankrd58, Rpl39, Upf3b, 2610020O08Rik, Akap14, Ndufa1, Rnf113a1, Gm9, Rhox1, Rhox2, Rhox3, Rhox4a, LOC100039913, Rhox4b, LOC100039948, Rhox4c, EG434760, LOC546295, Rhox4d, LOC100040016, Rhox4e, LOC100040043, LOC621852, Rhox4h, LOC546294, EG621903, EG434766, Rhox4g, EG434758, LOC622301, EG622311, Rhox6, Rhox7, Rhox8, LOC436198, Rhox9, LOC100039620, 4930525M21Rik, 4930430D24Rik, Rhox10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-378E19.T7 (MSMg01no378_e19.b1)MSMg01-378E19.TJ (MSMg01no378_e19.g1)
ACCAG483178AG483179
length768775
length of high quality
(start - end)		488 (51 - 538)482 (79 - 560)
definitionCHROMAT_FILE: MSMg01no378_e19.b1 PHD_FILE: MSMg01no378_e19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:18:45 2005CHROMAT_FILE: MSMg01no378_e19.g1 PHD_FILE: MSMg01no378_e19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:18:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNTTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCCAGGACTCTACTGATTTTCCCACCTCAGGCCCCACCCTCA
ATTATATATATATATATATATATATATATATATATATATATATATATATA
TATATATATATCCAAGAGAGTTTAACTGTGTGGCCTTGGCTGTTCTAGAA
CTGGTTCTGTAGTTCAGGCTGGACTCATACTCAGAGATCCACTTGCCTTT
GCCTCCCAAATGCTGTGATTAAAGGTATACGCCACCACTTGGTAGGAAAA
AATAATTTTATATGCAATTGTGTTTTGCCTGCATGTATGTATGTGTAGCA
CATGCATTCAGTGCTCATGGGGTCCAGAAGAAGGCATCAGATTCCCTGGA
ACTAAAATTGCAGGCAAATATGAGCCAATGTGGATGCTGAGAACTGTACC
CAGGTCCTCTGCAAAAGCAGCAGGTGCCTTTCTTAATTGCTGAATCATCT
CCCCAGTCTGGGGCCTGGCCCTTTTGTATTTTTAATGATCTCTTTAACGN
ANGCAACAAGCCAATGATGTTTGTTTATAAAGCAAGGCCCGAGGGAGGCC
CAGTGGTCTGCCCAAACTGTCTGGCTCAAAGCCACGAAAATTGTGGATGT
GTCCTCGGAAGCCCTGAAGAAAGCCCTAAGAGGAAGAGGAACTCTGTTTT
TTAAACCCCTCCGGGCCAGGCCCATGTGCCTGCCCTCCTGCCCGCGGTTG
GGGGGAGGCTCCTCACTG

NCCCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTAGGTTCCAATACCTAATAA
AGCACTATATGAAATGAACAAGGTGAAACATCTTAAGAATGAATACTCTT
CAACCAGAACATATAGCTTTTTTTGTTATTTGTGTATCTACCTCATGAGG
CATTTATAAGACAACTTAGTAAAATCTTAGTTTGCTTGGGGCATAACAAG
CTCATAATGTCCCACTTGGCCCTCCTGTTTGAGTTGATCTAGTAGGTCTT
CCTTCCGCCGTTTTCGACCTACCACCAGGTACCTATCATGGCCCACCCCA
TGAGACTTACTCTTCAGGCCATACTTCTGAGCAATCTGATGGATTTGCTT
CCGTTCATCATTGGTCAGCTCCGTGGAGAAGGTCAAATCTGAGTGGCTTT
CAGAGCGGGCATAGTTTCTGATAATTTGTTCTATATCCCTCTTAGCAATT
TTATTGACCCTCTCTACATCTAGACCAAGGCCTTCTCGCTTATGCTGCTC
TTTAACTGAGATAGGCTCCCGTATGCCCTCACCAGATTTCCCTAAACCAC
CACCCGTCCAGCCCATCTTTCTCAGCAGTTGATTCCCCTATGTTGCCTTC
TTTGATTTGTTGTTTGGAAGCTTCTTCTGGCTGACGGGCCGGAAATTCTT
TTTCTTGAAATCCCTCCTTAACAGTCTCTTTTCTTCAAATTTTTAAAGAC
AACCCGTCGGCCCTTTTTCAGGGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no378_e19.g1 MSMg01no378_e19.g1 CHROMAT_FILE:
MSMg01no378_e19.g1 PHD_FILE: MSMg01no378_e19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:18:45 2005
         (482 letters)



>mm_chrX_34428202_34429083
          Length = 882

 Score =  932 bits (482), Expect = 0.0
 Identities = 482/482 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctaggttccaatacctaataaagcactatatgaaatgaacaaggtgaaacatcttaaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctaggttccaatacctaataaagcactatatgaaatgaacaaggtgaaacatcttaaga 260

                                                                       
Query: 61  atgaatactcttcaaccagaacatatagctttttttgttatttgtgtatctacctcatga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgaatactcttcaaccagaacatatagctttttttgttatttgtgtatctacctcatga 320

                                                                       
Query: 121 ggcatttataagacaacttagtaaaatcttagtttgcttggggcataacaagctcataat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggcatttataagacaacttagtaaaatcttagtttgcttggggcataacaagctcataat 380

                                                                       
Query: 181 gtcccacttggccctcctgtttgagttgatctagtaggtcttccttccgccgttttcgac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtcccacttggccctcctgtttgagttgatctagtaggtcttccttccgccgttttcgac 440

                                                                       
Query: 241 ctaccaccaggtacctatcatggcccaccccatgagacttactcttcaggccatacttct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctaccaccaggtacctatcatggcccaccccatgagacttactcttcaggccatacttct 500

                                                                       
Query: 301 gagcaatctgatggatttgcttccgttcatcattggtcagctccgtggagaaggtcaaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gagcaatctgatggatttgcttccgttcatcattggtcagctccgtggagaaggtcaaat 560

                                                                       
Query: 361 ctgagtggctttcagagcgggcatagtttctgataatttgttctatatccctcttagcaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctgagtggctttcagagcgggcatagtttctgataatttgttctatatccctcttagcaa 620

                                                                       
Query: 421 ttttattgaccctctctacatctagaccaaggccttctcgcttatgctgctctttaactg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttttattgaccctctctacatctagaccaaggccttctcgcttatgctgctctttaactg 680

             
Query: 481 ag 482
           ||
Sbjct: 681 ag 682


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 882
Length adjustment: 10
Effective length of query: 472
Effective length of database: 872
Effective search space:   411584
Effective search space used:   411584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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