MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-378M01
Chromosome	X (Build37)
Map Location	34,199,261 - 34,199,741
singlet/doublet	singlet
Overlap gene	none
Upstream gene	EG665074, EG210457, Dock11, Il13ra1, Zcchc12, LOC547166, Lonrf3, EG621901, Pgrmc1, B230333C21Rik
Downstream gene	LOC621983, Slc25a43, Slc25a5, C330007P06Rik, Ube2a, Nkrf, Sept6, Ankrd58, Rpl39, Upf3b, 2610020O08Rik, Akap14, Ndufa1, Rnf113a1, Gm9, Rhox1, Rhox2, Rhox3, Rhox4a, LOC100039913, Rhox4b, LOC100039948, Rhox4c, EG434760, LOC546295, Rhox4d, LOC100040016, Rhox4e, LOC100040043, LOC621852, Rhox4h, LOC546294, EG621903, EG434766, Rhox4g, EG434758, LOC622301, EG622311, Rhox6, Rhox7
Link	Open Mouse BAC browser

Click to get alignment info.

name	EG665074 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:665074 MGI:3648576
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 62 ESTs

name	EG210457 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:210457 MGI:3648336
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 15 Proteins

name	Dock11 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:75974 MGI:1923224
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Il13ra1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:16164 MGI:105052
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Zcchc12 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:72693 MGI:1919943
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC547166 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:547166
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 20 ESTs, 8 Proteins pseudo : _no_value

name	Lonrf3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:74365 MGI:1921615
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG621901 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:621901 MGI:3644556
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	Pgrmc1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:53328 MGI:1858305
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	B230333C21Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:338351 MGI:2443758
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC621983 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:621983
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 514 ESTs, 10 Proteins pseudo : _no_value

name	Slc25a43 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:194744 MGI:2684854
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 11 ESTs, 2 Proteins

name	Slc25a5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:11740 MGI:1353496
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	C330007P06Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:77644 MGI:1924894
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 13 mRNAs, 231 ESTs, 4 Proteins

name	Ube2a (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:22209 MGI:102959
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Nkrf (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:77286 MGI:1924536
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Sept6 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:56526 MGI:1888939
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ankrd58 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:245381 MGI:3045274
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rpl39 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67248 MGI:1914498
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Upf3b (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:68134 MGI:1915384
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	2610020O08Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67050 MGI:1914300
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Akap14 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:434756 MGI:3618288
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ndufa1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:54405 MGI:1929511
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rnf113a1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:69942 MGI:1917192
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Gm9 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:194854 MGI:2684855
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rhox1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:385343 MGI:3580237
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rhox2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:75199 MGI:1922449
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rhox3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:382209 MGI:2676626
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rhox4a (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:664609 MGI:3580240
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100039913 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039913
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 mRNAs, 8 ESTs, 9 Proteins

name	Rhox4b (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:57737 MGI:1930129
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100039948 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039948
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 mRNAs, 8 ESTs, 9 Proteins

name	Rhox4c (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:434759 MGI:3613386
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG434760 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:434760 MGI:3648779
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC546295 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:546295
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 5 Proteins pseudo : _no_value

name	Rhox4d (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:664610 MGI:3613388
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100040016 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040016
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 mRNAs, 8 ESTs, 6 Proteins

name	Rhox4e (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:194856 MGI:3613390
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100040043 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040043
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 mRNAs, 4 ESTs, 8 Proteins

name	LOC621852 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:621852
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rhox4h (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:636177 MGI:3613392
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC546294 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:546294
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 mRNAs, 3 ESTs, 7 Proteins

name	EG621903 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:621903 MGI:3645894
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 10 mRNAs, 81 ESTs, 2 Proteins

name	EG434766 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:434766 MGI:3648776
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 mRNAs, 9 ESTs, 8 Proteins

name	Rhox4g (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:664608 MGI:3613394
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG434758 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:434758 MGI:3704137
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 mRNAs, 3 ESTs, 8 Proteins

name	LOC622301 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:622301
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 mRNAs, 5 ESTs, 5 Proteins

name	EG622311 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:622311 MGI:3646282
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins

name	Rhox6 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:19202 MGI:1202888
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rhox7 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:547168 MGI:3580246
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG665074 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149271491 GeneID:665074 MGI:3648576
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 62 ESTs product : predicted gene, EG665074 transcript_id : XM_974384.2

name	EG210457 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:83000804 GeneID:210457 MGI:3648336
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 15 Proteins product : predicted gene, EG210457 transcript_id : XM_141682.3

name	Dock11 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:125660463 GeneID:75974 MGI:1923224
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : dedicator of cytokinesis 11 transcript_id : NM_001009947.3

name	Il13ra1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118129910 GeneID:16164 MGI:105052
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : interleukin 13 receptor, alpha 1 transcript_id : NM_133990.4

name	Zcchc12 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803251 GeneID:72693 MGI:1919943
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : zinc finger, CCHC domain containing 12 transcript_id : NM_028325.2

name	Lonrf3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:71043954 GeneID:74365 MGI:1921615
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : LON peptidase N-terminal domain and ring finger 3 transcript_id : NM_028894.1

name	EG621901 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94407282 GeneID:621901 MGI:3644556
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : predicted gene, EG621901 transcript_id : XM_896717.2

name	Pgrmc1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118131178 GeneID:53328 MGI:1858305
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : progesterone receptor membrane component 1 transcript_id : NM_016783.3

name	B230333C21Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:126432545 GeneID:338351 MGI:2443758
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA B230333C21 gene transcript_id : NM_001081956.1

name	Slc25a43 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94407274 GeneID:194744 MGI:2684854
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 11 ESTs, 2 Proteins product : solute carrier family 25, member 43, transcript variant 1 transcript_id : XM_110743.5

name	Slc25a5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142360208 GeneID:11740 MGI:1353496
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 5 transcript_id : NM_007451.3

name	C330007P06Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149271496 GeneID:77644 MGI:1924894
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 12 mRNAs, 230 ESTs, 4 Proteins product : RIKEN cDNA C330007P06 gene, transcript variant 2 transcript_id : XM_895881.3

name	Ube2a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130597 GeneID:22209 MGI:102959
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ubiquitin-conjugating enzyme E2A, RAD6 homolog (S. cerevisiae) transcript_id : NM_019668.3

name	Nkrf (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:78191783 GeneID:77286 MGI:1924536
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : NF-kappaB repressing factor transcript_id : NM_029891.2

name	Sept6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142382370 GeneID:56526 MGI:1888939
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : septin 6 transcript_id : NM_019942.3

name	Ankrd58 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142372809 GeneID:245381 MGI:3045274
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ankyrin repeat domain 58 transcript_id : NM_173779.3

name	Rpl39 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:13385551 GeneID:67248 MGI:1914498
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ribosomal protein L39 transcript_id : NM_026055.1

name	Upf3b (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141801318 GeneID:68134 MGI:1915384
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : UPF3 regulator of nonsense transcripts homolog B (yeast) transcript_id : NM_026573.2

name	2610020O08Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802718 GeneID:67050 MGI:1914300
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 2610020O08 gene transcript_id : NM_025937.3

name	Akap14 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142366588 GeneID:434756 MGI:3618288
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : A kinase (PRKA) anchor protein 14 transcript_id : NM_001033785.2

name	Ndufa1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:110556627 GeneID:54405 MGI:1929511
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 1 transcript_id : NM_019443.2

name	Rnf113a1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:23943839 GeneID:69942 MGI:1917192
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ring finger protein 113A1 transcript_id : NM_153503.1

name	Gm9 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142387066 GeneID:194854 MGI:2684855
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : gene model 9, (NCBI) transcript_id : NM_001033234.2

name	Rhox1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:115311557 GeneID:385343 MGI:3580237
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : reproductive homeobox 1 transcript_id : NM_001025084.2

name	Rhox2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:91598897 GeneID:75199 MGI:1922449
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : reproductive homeobox 2 transcript_id : NM_029203.2

name	Rhox3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:73088779 GeneID:382209 MGI:2676626
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : reproductive homeobox 3 transcript_id : NM_194063.2

name	Rhox4a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:89242155 GeneID:664609 MGI:3580240
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : reproductive homeobox 4A transcript_id : NM_001039688.1

name	LOC100039913 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149271497 GeneID:100039913
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 ESTs, 4 Proteins product : similar to reproductive homeobox on X chromosome 2, transcript variant 1 transcript_id : XM_001474057.1

name	LOC100039913 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149271499 GeneID:100039913
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 mRNAs, 7 ESTs, 9 Proteins product : similar to reproductive homeobox on X chromosome 2, transcript variant 2 transcript_id : XM_001474076.1

name	Rhox4b (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:89242132 GeneID:57737 MGI:1930129
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : reproductive homeobox 4B transcript_id : NM_021300.2

name	LOC100039948 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149271501 GeneID:100039948
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 ESTs, 4 Proteins product : similar to reproductive homeobox on X chromosome 2, transcript variant 1 transcript_id : XM_001474133.1

name	LOC100039948 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149271503 GeneID:100039948
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 mRNAs, 7 ESTs, 9 Proteins product : similar to reproductive homeobox on X chromosome 2, transcript variant 2 transcript_id : XM_001474151.1

name	Rhox4c (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:89242149 GeneID:434759 MGI:3613386
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : reproductive homeobox 4C transcript_id : NM_001039689.1

name	EG434760 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:133779005 GeneID:434760 MGI:3648779
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : predicted gene, EG434760 transcript_id : NM_001081669.2

name	Rhox4d (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:89242161 GeneID:664610 MGI:3613388
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : reproductive homeobox 4D transcript_id : NM_001039695.1

name	LOC100040016 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149271506 GeneID:100040016
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 ESTs, 6 Proteins product : similar to reproductive homeobox on X chromosome 2, transcript variant 1 transcript_id : XM_001474270.1

name	LOC100040016 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149271508 GeneID:100040016
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 mRNAs, 7 ESTs, 6 Proteins product : similar to reproductive homeobox on X chromosome 2, transcript variant 2 transcript_id : XM_001474291.1

name	Rhox4e (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:89242131 GeneID:194856 MGI:3613390
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : reproductive homeobox 4E transcript_id : NM_201236.3

name	LOC100040043 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149271512 GeneID:100040043
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 mRNAs, 3 ESTs, 8 Proteins product : similar to reproductive homeobox on X chromosome 2, transcript variant 2 transcript_id : XM_001474397.1

name	LOC100040043 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149271510 GeneID:100040043
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs, 4 Proteins product : similar to reproductive homeobox on X chromosome 2, transcript variant 1 transcript_id : XM_001474373.1

name	LOC621852 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:91598659 GeneID:621852
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : similar to similar to testis expressed homeobox 2 transcript_id : NM_001040089.1

name	Rhox4h (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:89242159 GeneID:636177 MGI:3613392
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : reproductive homeobox 4H transcript_id : NM_001039696.1

name	LOC546294 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:94407302 GeneID:546294
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 mRNAs, 3 ESTs, 7 Proteins product : similar to testis expressed homeobox 2, transcript variant 2 transcript_id : XM_976278.1

name	EG621903 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149271514 GeneID:621903 MGI:3645894
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 10 mRNAs, 81 ESTs, 2 Proteins product : predicted gene, EG621903 transcript_id : XM_885629.3

name	EG434766 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94407309 GeneID:434766 MGI:3648776
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 mRNAs, 9 ESTs, 8 Proteins product : predicted gene, EG434766 transcript_id : XM_486662.3

name	Rhox4g (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:89242157 GeneID:664608 MGI:3613394
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : reproductive homeobox 4G transcript_id : NM_001039698.1

name	EG434758 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149271517 GeneID:434758 MGI:3704137
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 mRNAs, 3 ESTs, 8 Proteins product : predicted gene, EG434758, transcript variant 2 transcript_id : XM_885355.3

name	EG434758 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149271515 GeneID:434758 MGI:3704137
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST, 1 Protein product : predicted gene, EG434758 transcript_id : XM_001474585.1

name	LOC622301 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149271518 GeneID:622301
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 mRNAs, 5 ESTs, 5 Proteins product : similar to reproductive homeobox on X chromosome 2 transcript_id : XM_886726.3

name	EG622311 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149271493 GeneID:622311 MGI:3646282
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins product : predicted gene, EG622311 transcript_id : XM_886739.2

name	Rhox6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6679512 GeneID:19202 MGI:1202888
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : reproductive homeobox 6 transcript_id : NM_008955.1

name	Rhox7 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:71480151 GeneID:547168 MGI:3580246
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : reproductive homeobox 7 transcript_id : NM_001025086.1

name	EG665074 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149271492 GeneID:665074 MGI:3648576
definition	codon_start : 1 product : hypothetical protein protein_id : XP_979478.2

name	EG210457 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:83000805 GeneID:210457 MGI:3648336
definition	codon_start : 1 product : similar to testis derived transcript protein_id : XP_141682.3

name	Dock11 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:125660464 GeneID:75974 MGI:1923224
definition	GO_function : GO:0005525 - GTP binding [Evidence IEA]; GO:0051020 - GTPase binding [Evidence IEA]; GO:0005085 - guanyl-nucleotide exchange factor activity [Evidence IEA]; GO:0017048 - Rho GTPase binding [Evidence IPI]; GO:0005089 - Rho guanyl-nucleotide exchange factor activity [Evidence IDA] codon_start : 1 note : spleen specific 238 kDa protein with PH domain product : dedicator of cytokinesis 11 protein_id : NP_001009947.2

name	Il13ra1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:40254373 CCDS:CCDS30057.1 GeneID:16164 MGI:105052
definition	GO_component : GO:0005887 - integral to plasma membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004896 - hematopoietin/interferon-class (D200-domain) cytokine receptor activity [Evidence IEA]; GO:0004907 - interleukin receptor activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA] GO_process : GO:0007166 - cell surface receptor linked signal transduction [Evidence IEA] codon_start : 1 product : interleukin 13 receptor, alpha 1 protein_id : NP_598751.3

name	Zcchc12 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21312230 CCDS:CCDS30058.1 GeneID:72693 MGI:1919943
definition	GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] codon_start : 1 product : zinc finger, CCHC domain containing 12 protein_id : NP_082601.1

name	Lonrf3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:71043955 CCDS:CCDS30059.1 GeneID:74365 MGI:1921615
definition	GO_component : GO:0005576 - extracellular region [Evidence IEA] GO_function : GO:0004176 - ATP-dependent peptidase activity [Evidence IEA]; GO:0005185 - neurohypophyseal hormone activity [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006510 - ATP-dependent proteolysis [Evidence IEA] codon_start : 1 product : ring finger protein 127 protein_id : NP_083170.1

name	EG621901 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94407283 GeneID:621901 MGI:3644556
definition	codon_start : 1 product : similar to Novel transcript protein_id : XP_901810.2

name	Pgrmc1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31980806 CCDS:CCDS30060.1 GeneID:53328 MGI:1858305
definition	GO_component : GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0005792 - microsome [Evidence IEA] GO_function : GO:0008289 - lipid binding [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0005496 - steroid binding [Evidence IEA] codon_start : 1 product : progesterone receptor membrane component protein_id : NP_058063.2

name	B230333C21Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:126432546 GeneID:338351 MGI:2443758
definition	GO_function : GO:0000166 - nucleotide binding [Evidence IEA] codon_start : 1 product : Talia protein_id : NP_001075425.1

name	Slc25a43 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:38086109 GeneID:194744 MGI:2684854
definition	codon_start : 1 product : similar to novel mitochondrial carrier domain-containing protein isoform 1 protein_id : XP_110743.3

name	Slc25a5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:22094075 CCDS:CCDS30062.1 GeneID:11740 MGI:1353496
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0005743 - mitochondrial inner membrane [Evidence IDA]; GO:0005739 - mitochondrion [Evidence IDA] GO_function : GO:0005488 - binding [Evidence IEA] GO_process : GO:0006839 - mitochondrial transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : adenine nucleotide translocator 2, fibroblast; adenine nucleotide translocase product : solute carrier family 25, member 5 protein_id : NP_031477.1

name	C330007P06Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:83000747 GeneID:77644 MGI:1924894
definition	codon_start : 1 product : hypothetical protein LOC77644 isoform 2 protein_id : XP_900974.1

name	Ube2a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:9790041 CCDS:CCDS30064.1 GeneID:22209 MGI:102959
definition	GO_component : GO:0000785 - chromatin [Evidence IDA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0016874 - ligase activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0004840 - ubiquitin conjugating enzyme activity [Evidence IEA] GO_process : GO:0006281 - DNA repair [Evidence IEA]; GO:0001701 - embryonic development (sensu Mammalia) [Evidence IMP]; GO:0006464 - protein modification [Evidence IEA]; GO:0006974 - response to DNA damage stimulus [Evidence IEA]; GO:0006511 - ubiquitin-dependent protein catabolism [Evidence IEA] codon_start : 1 note : ubiquitin-conjugating enzyme HR6A; ubiquitin-conjugating enzyme E2A (RAD6 homolog) product : ubiquitin-conjugating enzyme E2A, RAD6 homolog protein_id : NP_062642.1

name	Nkrf (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:78191784 CCDS:CCDS30065.1 GeneID:77286 MGI:1924536
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0003725 - double-stranded RNA binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA] GO_process : GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 product : NF-kappaB repressing factor protein_id : NP_084167.2

name	Sept6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31560370 CCDS:CCDS30066.1 GeneID:56526 MGI:1888939
definition	GO_function : GO:0005525 - GTP binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA] GO_process : GO:0007049 - cell cycle [Evidence IEA]; GO:0051301 - cell division [Evidence IEA] codon_start : 1 product : septin 6 protein_id : NP_064326.2

name	Ankrd58 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30424651 CCDS:CCDS30067.1 GeneID:245381 MGI:3045274
definition	GO_function : GO:0003677 - DNA binding [Evidence IEA] codon_start : 1 product : ankyrin repeat domain 58 protein_id : NP_776140.1

name	Rpl39 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13385552 GeneID:67248 MGI:1914498
definition	GO_component : GO:0030529 - ribonucleoprotein complex [Evidence IEA] codon_start : 1 product : ribosomal protein L39 protein_id : NP_080331.1

name	Upf3b (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:74959788 CCDS:CCDS30068.1 GeneID:68134 MGI:1915384
definition	GO_component : GO:0005634 - nucleus [Evidence ISS] GO_function : GO:0003729 - mRNA binding [Evidence ISS]; GO:0000166 - nucleotide binding [Evidence IEA] GO_process : GO:0006986 - response to unfolded protein [Evidence ISS] codon_start : 1 note : hUPF3B product : UPF3 regulator of nonsense transcripts homolog B protein_id : NP_080849.1

name	2610020O08Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31541903 CCDS:CCDS30069.1 GeneID:67050 MGI:1914300
definition	codon_start : 1 exception : mismatches in translation product : nuclear NF-kappaB activating protein protein_id : NP_080213.2

name	Akap14 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:85702101 CCDS:CCDS30070.1 GeneID:434756 MGI:3618288
definition	GO_function : GO:0016301 - kinase activity [Evidence IEA] codon_start : 1 note : A-kinase anchor protein 28 product : A kinase (PRKA) anchor protein 14 protein_id : NP_001028957.1

name	Ndufa1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:9506911 GeneID:54405 MGI:1929511
definition	EC_number : 1.6.99.3 GO_component : GO:0005739 - mitochondrion [Evidence IDA] GO_function : GO:0008137 - NADH dehydrogenase (ubiquinone) activity [Evidence IEA]; GO:0003954 - NADH dehydrogenase activity [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA] codon_start : 1 note : NADH ubiquinone oxidoreductase subunit MWFE; NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 1 (7.5kD, MWFE); NADH dehydrogenase 1 alpha subcomplex, 1 product : NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 1 protein_id : NP_062316.1

name	Rnf113a1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:23943840 CCDS:CCDS30072.1 GeneID:69942 MGI:1917192
definition	GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] codon_start : 1 product : ring finger protein 113A1 protein_id : NP_705723.1

name	Gm9 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:85701742 CCDS:CCDS30073.1 GeneID:194854 MGI:2684855
definition	codon_start : 1 product : hypothetical protein LOC194854 protein_id : NP_001028406.1

name	Rhox1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:115311558 GeneID:385343 MGI:3580237
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence ISS]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA] GO_process : GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA] codon_start : 1 note : reproductive homeobox on X chromosome 1 product : reproductive homeobox on chromosome X, 1 protein_id : NP_001020255.2

name	Rhox2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13386376 CCDS:CCDS30075.1 GeneID:75199 MGI:1922449
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence ISS]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA] GO_process : GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA] codon_start : 1 note : reproductive homeobox on X chromosome, 2 product : reproductive homeobox on X chromosome 2 protein_id : NP_083479.1

name	Rhox3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:73088780 CCDS:CCDS30076.1 GeneID:382209 MGI:2676626
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence ISS]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA] GO_process : GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA] codon_start : 1 note : testis expressed homeobox 2; reproductive homeobox on X chromosome, 3 product : reproductive homeobox 3 protein_id : NP_918952.2

name	Rhox4a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:89242156 GeneID:664609 MGI:3580240
definition	GO_function : GO:0003677 - DNA binding [Evidence ISS] codon_start : 1 product : reproductive homeobox 4A protein_id : NP_001034777.1

name	LOC100039913 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149271498 GeneID:100039913
definition	codon_start : 1 product : hypothetical protein isoform 1 protein_id : XP_001474107.1

name	LOC100039913 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149271500 GeneID:100039913
definition	codon_start : 1 product : hypothetical protein isoform 2 protein_id : XP_001474126.1

name	Rhox4b (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:10946596 CCDS:CCDS30077.1 GeneID:57737 MGI:1930129
definition	GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA] codon_start : 1 note : homeobox protein EHOX; reproductive homeobox on X chromosome 4; ES cell derived homeobox; ES cell derived homeobox containing product : reproductive homeobox 4B protein_id : NP_067275.1

name	LOC100039948 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149271502 GeneID:100039948
definition	codon_start : 1 product : hypothetical protein isoform 1 protein_id : XP_001474183.1

name	LOC100039948 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149271504 GeneID:100039948
definition	codon_start : 1 product : hypothetical protein isoform 2 protein_id : XP_001474201.1

name	Rhox4c (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:89242150 GeneID:434759 MGI:3613386
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA] GO_process : GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA] codon_start : 1 product : reproductive homeobox 4C protein_id : NP_001034778.1

name	EG434760 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:133779006 GeneID:434760 MGI:3648779
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA] GO_process : GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA] codon_start : 1 product : hypothetical protein LOC434760 protein_id : NP_001075138.2

name	Rhox4d (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:89242162 GeneID:664610 MGI:3613388
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA] GO_process : GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA] codon_start : 1 note : novel protein similar to reproductive homeobox 4 Rhox4 product : reproductive homeobox 4D protein_id : NP_001034784.1

name	LOC100040016 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149271507 GeneID:100040016
definition	codon_start : 1 product : hypothetical protein isoform 1 protein_id : XP_001474320.1

name	LOC100040016 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149271509 GeneID:100040016
definition	codon_start : 1 product : hypothetical protein isoform 2 protein_id : XP_001474341.1

name	Rhox4e (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:66955889 CCDS:CCDS30078.1 GeneID:194856 MGI:3613390
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA] GO_process : GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA] codon_start : 1 note : EHOX-like product : reproductive homeobox 4E protein_id : NP_957688.2

name	LOC100040043 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149271511 GeneID:100040043
definition	codon_start : 1 product : hypothetical protein isoform 1 protein_id : XP_001474423.1

name	LOC100040043 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149271513 GeneID:100040043
definition	codon_start : 1 product : hypothetical protein isoform 2 protein_id : XP_001474447.1

name	LOC621852 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:91598660 GeneID:621852
definition	codon_start : 1 exception : mismatches in translation product : similar to similar to testis expressed homeobox 2 protein_id : NP_001035178.1

name	Rhox4h (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:89242160 GeneID:636177 MGI:3613392
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA] GO_process : GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA] codon_start : 1 product : reproductive homeobox 4H protein_id : NP_001034785.1

name	LOC546294 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:94407303 GeneID:546294
definition	codon_start : 1 product : similar to reproductive homeobox on X chromosome 3 isoform 2 protein_id : XP_981372.1

name	EG621903 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:83000828 GeneID:621903 MGI:3645894
definition	codon_start : 1 product : similar to PGC7 protein_id : XP_890722.1

name	EG434766 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94407310 GeneID:434766 MGI:3648776
definition	codon_start : 1 product : hypothetical protein protein_id : XP_486662.2

name	Rhox4g (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:89242158 GeneID:664608 MGI:3613394
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA] GO_process : GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA] codon_start : 1 product : reproductive homeobox 4G protein_id : NP_001034787.1

name	EG434758 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149271516 GeneID:434758 MGI:3704137
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001474635.1

name	EG434758 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94407312 GeneID:434758 MGI:3704137
definition	codon_start : 1 product : hypothetical protein isoform 2 protein_id : XP_890448.2

name	LOC622301 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:94407314 GeneID:622301
definition	codon_start : 1 product : hypothetical protein protein_id : XP_891819.2

name	EG622311 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149271494 GeneID:622311 MGI:3646282
definition	codon_start : 1 product : similar to reproductive homeobox on X chromosome 7 protein_id : XP_891832.2

name	Rhox6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6679513 CCDS:CCDS30080.1 GeneID:19202 MGI:1202888
definition	GO_component : GO:0005667 - transcription factor complex [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence ISS]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA] GO_process : GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA] codon_start : 1 note : placenta specific homeobox 1 product : reproductive homeobox on X chromosome, 6 protein_id : NP_032981.1

name	Rhox7 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:71480152 CCDS:CCDS30081.1 GeneID:547168 MGI:3580246
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence ISS]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA] GO_process : GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA] codon_start : 1 exception : mismatches in translation note : reproductive homeobox on X chromosome 7 product : reproductive homeobox on chromosome X, 7 protein_id : NP_001020257.1

name	LOC547166 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149271479 GeneID:547166
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 20 ESTs, 8 Proteins product : similar to 60S ribosomal protein L13a (Transplantation antigen P198) (Tum-P198 antigen) pseudo : _no_value transcript_id : XR_031016.1

name	LOC621983 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149271495 GeneID:621983
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 514 ESTs, 10 Proteins product : similar to Ribosomal protein L7 pseudo : _no_value transcript_id : XR_031283.1

name	LOC546295 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149271505 GeneID:546295
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 5 Proteins product : similar to reproductive homeobox on X chromosome 3 pseudo : _no_value transcript_id : XR_031662.1

clone name	MSMg01-108P19
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-355A01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-075M17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-080A17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-423P21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-392E08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-389D06
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-455B06
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-272H07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-513F08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-328C14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-140L06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-171L19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-461A15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-189F03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-384J20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-060K21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-443C16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-526N16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-299E07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-067L15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-124M08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-413F07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-534I02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-122J08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-302L20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-431A08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-516G05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-046L15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-140K14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-163B10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-290E11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-378M01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-399O23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-237E20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-344E24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-489A22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-167A23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-175P11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-180M11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-366B13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-066D06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-360M13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-378E19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-361F14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-051L09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-274I07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-095D04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-363K09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-201O05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-402L20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-313N21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-068O04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-339C09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-250P13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-235E14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-043I08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-287D02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-036M10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-206I01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-195C10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-013J12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-315J03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-340O17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-052F18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-322P13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-088O21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-126C10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-169N20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-260D09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-214F17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-131D11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-320I08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-047F21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-153I13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-115K11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-115M11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-218A21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-080A17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-260L12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-104K07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-078K10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-296N19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-218C12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-194B19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-350H20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-260E20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-068A12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-054P05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-235M10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-281C14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-288P03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-113G24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-196O01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-260E20
singlet/doublet	singlet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-378M01.T7 (MSMg01no378_m01.b1)	MSMg01-378M01.TJ (MSMg01no378_m01.g1)
ACC	AG483526	AG483527
length	750	752
length of high quality (start - end)	492 (51 - 542)	248 (78 - 325)
definition	CHROMAT_FILE: MSMg01no378_m01.b1 PHD_FILE: MSMg01no378_m01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:19:19 2005	CHROMAT_FILE: MSMg01no378_m01.g1 PHD_FILE: MSMg01no378_m01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:19:19 2005
singlet/doublet	singlet	---
BLAST hit	unique	no hit data
sequence	GTGGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGCAGGAT CCGCGGAATTCTAGGCCAACCAACCTGGGTTACAGAGTGAGACCCCATTT CAAAACAACAACCAGGAAAAAGGAGAAGAACCCTTTTATGTAAGTCTTAA AGGGGCTGAAGAAATGAGCTAGAGGTGAAAAGCTGATCGAGCTAGAACAT ACAATTTATATGATCTGTGCAAGCCATGTCACAGGTGAATGGCAGCAGCA GAGCAAAACCCCAGGATTCTTTTTAATTTTTGAGAAGGACTCTCACCATG TAGCTGGGCTTGAACTTCTGGTCCTCCTGCTTGCACCCCTCAAATGCTGG ATTACAGGTGTGTGCCACCATACCTTGCTCATCCTATTATGGTTCTAGAC ACACAATGATGCTAAAACTCTTACATTAACGAGCAGAATGCGGAATACTT TGAATTTGAGATCAGAGGAGAAAAAGTAAGTGGTATCACAAATACATTAT GATTTTGGATATTTGGATAGTTTAAGTTAGATTCTTAAGATCAACACAAA CACATTTGCACAGTTTTTTTTGTATTTTCTCTAAGTCACAGAATCATACA TAGTGGATTTTGTGGGATGTAAAGCATACCCTGATCAAACCCTTAACATA TTTATCTATCCATTTGTCTCCCAAAACTCATAATTTTGTGTATATAAAGT CATGCCGCCTGAGAAACCTGCGGCTTATTTACTCTTACTTTAAGAAGAGG	NACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXTTTAAGTTGGGGCTCAATGGGCC ACACTAGCAGAAGCATGGAAGACGGTGGAACTGGGTATGATTTGAACTGG GGAGCCTGCCTTAGAGGCTTCAGAAGAGAAGAATATTTGTATGTTGCTTA GAAATCATTCTTTTGATATTTTGGTGAAGAGTGTGGCTGCTTTTTGCCCT TGTCTAAAGAGTCTGCCTGAGGCTAAGTTGAAGAGTTATGGATTGACTGC TTTGGCAGAGGACATTTCCAAACAACCTATTATTGCCTGTGTTGCATGGC TATTGAAGGCCAGTCTTATGCAGATCTATACTGAAAAGGAGCAAGCTGGG CAAGGAAAAATACAAAGTGTACAGTTAGAGGAAAAGGGGGCACTAGAAAG TGTAAACAGATTAAAAGAAAAGCCTCATTCTAAGTGGGATAAAGGGAATG GTGACCTCTGGGCAAAACACCACTCAGCTAAGCTTCCAATCTGTAAAATG AATTATAGACCAATGAACAGGAATTAAGGAAAGGCTTAGAGCCTGGTATG GTAATGCACACCTTTGATGCCAGAACTTATAAGGCTTAGGAGAGTATGTC TGAGTTTCAGCCTATCCTGTTCTATTGAGCAGCTGCCTTAACTCCCCGCT TATGCTATGTTTGCATTCTTTTCTCCCTTACATTTGGTTGAAATCGCTTT TG
quality values	Open. Hide. 16 19 13 9 9 13 11 8 8 8 8 10 13 24 25 25 32 26 26 32 37 30 26 22 27 25 30 43 47 33 33 33 33 33 37 33 27 8 7 7 7 8 8 10 11 15 15 19 10 10 10 23 30 48 48 36 36 36 36 36 36 59 59 59 37 37 26 22 12 11 11 11 21 25 37 41 46 59 59 50 44 47 36 38 38 42 57 57 57 43 43 43 50 50 50 48 50 50 42 42 40 40 40 47 50 50 50 50 50 54 54 48 50 47 50 51 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 46 46 46 46 46 46 57 57 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 59 62 62 62 62 68 68 68 68 62 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 62 62 62 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 62 62 62 68 62 62 62 62 62 62 62 52 62 62 62 62 68 68 68 68 68 68 38 38 39 41 43 44 44 68 68 57 57 57 57 57 59 59 59 59 59 59 59 57 57 57 57 57 57 57 57 68 68 68 68 57 57 57 57 57 57 59 59 59 68 59 59 59 59 57 57 57 59 59 68 57 57 57 57 57 57 54 57 57 52 52 57 57 59 59 52 52 52 52 52 52 57 57 68 57 57 54 52 50 50 41 41 50 59 59 59 59 59 57 37 43 43 43 43 35 43 43 57 47 47 47 57 57 57 57 57 57 57 57 57 48 48 48 44 57 43 43 43 44 46 47 43 43 44 43 43 43 39 37 32 28 28 28 37 39 37 40 40 36 30 30 28 19 19 12 15 15 16 16 18 28 25 33 30 25 23 32 32 39 39 39 33 36 36 39 39 43 34 31 25 22 30 25 35 39 34 19 14 9 9 10 11 26 34 40 39 40 37 31 28 25 22 20 31 21 25 20 14 13 11 10 10 13 11 11 11 11 12 28 28 34 28 23 10 10 8 8 8 6 8 8 15 16 25 15 14 14 23 28 34 30 24 24 19 19 22 26 13 13 12 16 15 11 11 11 13 18 18 28 23 22 12 14 12 15 12 18 10 12 8 8 8 9 18 23 20 8 8 8 8 10 10 20 24 19 15 12 11 11 11 11 10 10 19 21 16 15 12 14 14 18 15 11 11 8 13 15 10 8 6 6 6 8 6 8 8 8 8 8 8 10 12 9 9 9 9 10 13 8 8 9 13 12 14 10 10 8 8 8 15 15 10 10 8 8 8 9 9 7 12 7 7 7 8 10 10 13 12 11 11 10 10 10 10 10 13 9 9 9 7 8 8 11 10 10 11 19 19 14 12 13 8 8 8 8 8 8 12 13 13 18 12 10 10 6 6 6 8 9 8 10 8 9 12 11 9 9 9 9 10 10 9 9	Open. Hide. 0 3 6 7 10 10 11 11 9 12 23 21 36 35 39 41 41 41 41 39 37 37 37 37 37 39 39 39 44 44 34 25 18 9 9 9 8 9 9 10 8 12 16 30 24 34 31 40 44 37 39 39 39 39 39 44 48 42 42 42 34 25 20 12 14 11 14 14 12 12 17 15 25 30 30 33 33 59 59 59 59 59 57 57 57 57 59 59 59 53 53 53 50 50 50 57 57 53 53 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 51 51 57 57 48 48 48 57 57 44 43 43 44 44 47 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 68 68 68 68 68 68 68 68 59 57 48 48 48 57 57 68 68 68 68 57 57 57 57 57 57 57 59 59 50 50 50 50 50 50 51 51 68 68 68 68 68 68 68 68 68 57 59 59 59 57 68 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 44 43 43 47 47 54 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 54 54 54 54 59 59 68 59 59 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 59 59 48 48 57 57 57 57 57 57 57 59 50 53 47 47 37 27 21 12 11 11 12 12 11 11 11 11 11 27 25 43 59 59 59 59 59 59 59 59 59 59 59 57 50 50 53 53 48 57 48 48 48 57 57 57 50 54 54 54 54 54 57 59 59 57 48 48 48 48 48 57 57 59 68 68 68 59 59 68 68 68 59 59 57 57 48 48 48 57 57 59 57 57 44 44 43 44 44 42 44 43 37 36 43 44 40 32 21 18 18 19 32 43 50 43 50 43 43 32 32 20 27 27 41 43 43 42 37 37 43 47 43 42 37 28 28 28 44 44 43 37 37 39 39 39 27 26 21 17 17 22 24 32 32 39 36 36 36 39 37 37 39 43 43 41 39 39 39 39 42 35 39 39 57 57 42 42 32 30 30 37 28 28 30 37 37 39 43 57 48 43 43 43 43 43 39 36 36 43 39 48 40 46 39 43 34 29 22 17 17 19 30 34 47 47 37 37 28 33 28 28 28 33 39 31 24 20 20 28 32 34 43 48 48 43 43 43 35 33 26 24 17 17 22 22 19 15 14 16 16 13 15 17 21 18 19 15 21 12 19 12 12 12 11 19 22 24 23 23 26 19 23 23 23 23 28 28 28 28 19 11 11 9 9 9 12 16 30 30 23 25 27 30 19 15 9 8 8 8 8 10 12 25 32 24 22 24 29 33 33 39 35 31 24 20 15 13 8 8 8 12 19 17 21 8 8 8 8 8 9 9 9 12 11 10 13 10 8 10 13 8 8 8 22 25 19 19 12 13 8 10 7 6 8 8 12 12 12 12 10 9 8 8 8 8 8 8 10 10 12 12 11 9 12 8 8 8 8 8 10 10 10 11 10 9 7 8 8 8 9 9 10 13 10 10 10 10 10 9 8 8 6 6 8 10 10 10 8 8 8 8 8 8 10 7 7 8 8 10 10 15 12 12 12 10 9 9 9 10 10 10 8 6 6 6 8 8 8 8 8 8 8 8 8 8 8 8

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no378_m01.b1 MSMg01no378_m01.b1 CHROMAT_FILE:
MSMg01no378_m01.b1 PHD_FILE: MSMg01no378_m01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:19:19 2005
         (492 letters)



>mm_chrX_34199260_34200151
          Length = 892

 Score =  861 bits (445), Expect = 0.0
 Identities = 472/481 (98%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattctaggccaaccaacctgggttacagagtgagaccccatttcaaaacaacaaccag 65
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 gaattctaggccaaccaacctgggttacagagtgagaccccatttcaaaacaacaaccag 423

                                                                       
Query: 66  gaaaaaggagaagaacccttttatgtaagtcttaaaggggctgaagaaatgagctagagg 125
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 422 gaaaaaggagaagaacccttttatgtaagtcttaaagggactgaagaaatgagctagagg 363

                                                                       
Query: 126 tgaaaagctgatcgagctagaacatacaatttatatgatctgtgcaagccatgtcacagg 185
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 tgaaaagctgatcgaactagaacatacaatttatatgatctgtgcaagccatgtcacagg 303

                                                                       
Query: 186 tgaatggcagcagcagagcaaaaccccaggattctttttaatttttgagaaggactctca 245
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 302 tgaatggcagcagcagagcaaaaccccaggattctttttaatttttgagaaggagtctca 243

                                                                       
Query: 246 ccatgtagctgggcttgaacttctggtcctcctgcttgcacccctcaaatgctggattac 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 ccatgtagctgggcttgaacttctggtcctcctgcttgcacccctcaaatgctggattac 183

                                                                       
Query: 306 aggtgtgtgccaccataccttgctcatcctattatggttctagacacacaatgatgctaa 365
           ||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 182 aggtgtgtgtcaccataccttgctcatcctattatggttctagagacacaatgatgctaa 123

                                                                       
Query: 366 aactcttacattaacgagcagaatgcggaatactttgaatttgagatcagaggagaaaaa 425
           ||||||| ||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 aactcttccattaacaaacagaatgcggaatactttgaatttgagatcagaggagaaaaa 63

                                                                       
Query: 426 gtaagtggtatcacaaatacattatgattttggatatttggatagtttaagttagattct 485
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62  gtaagtggtatcagaaatacattatgattttggatatttggatagtttaagttagattct 3

            
Query: 486 t 486
           |
Sbjct: 2   t 2


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 892
Length adjustment: 10
Effective length of query: 482
Effective length of database: 882
Effective search space:   425124
Effective search space used:   425124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information