BAC Information

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BAC

Clone NameMSMg01-380F20
ChromosomeX (Build37)
Map Location 139,928,381 - 139,928,542
singlet/doubletsinglet
Overlap genenone
Upstream geneEG245651, LOC100039086, EG436235, Tmem164, Ammecr1, Rgag1, LOC209541, Chrdl1
Downstream genePak3, Capn6, Dcx, LOC666628, LOC666633, LOC100039378, LOC100039243, Alg13, LOC100039407, Trpc5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-380F20.T7 (MSMg01no380_f20.b1)MSMg01-380F20.TJ (MSMg01no380_f20.g1)
ACCAG484758AG484759
length696749
length of high quality
(start - end)		164 (44 - 207)524 (74 - 597)
definitionCHROMAT_FILE: MSMg01no380_f20.b1 PHD_FILE: MSMg01no380_f20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:21:25 2005CHROMAT_FILE: MSMg01no380_f20.g1 PHD_FILE: MSMg01no380_f20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:21:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCAGAATACCATGAAAAAAAAAAAACCTAAGACCACCCACTATGATGC
ACACAGATAAGAACTACATTAAAAAGAACCAAACAACAAACAAACAAAAA
AACAGGAAGCATTTTCTCTATTTCAGCCCATCCCATAAATGATGATCATT
CCCAATGGNAGAAAAAGAAAGGGGCTGGAAGCAAACCTTTCACCAATCCA
AAAAATTTTTGGGAACCCCCCGGGGGACAGGGGGCCCAAAAAAAAAAATA
AAAAAAAGGGTGTTTTTGGGTAAAAAAAAAACCTCCCTCCTCAAAAAAAA
ATCCCCCCCCCACCACAGTTTTTGCCCCCCCCCCCTCTTTCCTGGGGGGG
GGGGGGGGGGGGGGGNCGTGCGGNCNNNNNCCGGCGACCCCCCCCCCTNC
NNNTTTTCTTCTTTTTCTTTCTTTTCTCCCTAGGCTTGTCCNCAGNNNNG
GCGGAGGGGNNNNAAAAAAAAAAAAAGAAAAATTTTTTTTTTTTTTTTTT
TTTGGTGGGGGGGGGGGGGGGGGAAGAAAACCACCCCCCCCCCCCCCGGG
GTGGTGGGTGGGGTGTGTTTTNNATTTGTAAAAAAAAACAANNAAAACCA
CCCCCCCTCCCCTCCCCCCACTCACNCTTTGATATTTATTTTTTTT

ATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTAGAACTTAGGGGACCGTGGCAGGACT
ATCAATTAGAGACAAGGATGGTCTACATGCTTAAGACCCTTTCTCCATGA
ATGAATATTTATGAGATAATTAAAAATAGAACTTAAAAAGGAGTTTCGGT
GGGAAACTGCTCCTAGAACCCATAGTTCTTAGACGAAAATCTCAGTGCCA
GGAGTGTGCCACTCTGAGCTGTTACATGAATTTAGAGACTTCAAAAGTAA
TACGAGCAATTAGCATTCTTAGTAGGTGCCCACAAGCACTAGGTAGTAAG
ACAACCCCCGCCCCTCTATTTTGCTTCTAGGACATAGAAAAATCAAAGAG
GAGCCCTGTCAACCAGAAACTTCTTTCCCAACTGACAAACTTTCACAGTG
CTCAAAGGTGCTATGGAATCAGCTGGGGGAGAAAAGTCAATGATAATTTA
TTTGACCGCTAGAGAAACCTGAAAACTGAAGAAAAGAANAACCATGCCAG
GCAAGATGTGTTCACCGTTGCAACTGTGGTATGACTATATAGAAACAACC
AGCTACCTTCTGATTGNATTTGAGGTGCAGAAAAGAAATGTTTCGCANNG
AAGAATTTGTGTCTGAAACTGGCAACCTGCCCAAAAGAGCAGGGTTAGGG
AAATTTGTAGGCCCTGTGAAAGATCTACTAATGGCCTATGGAAATGTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no380_f20.b1 MSMg01no380_f20.b1 CHROMAT_FILE:
MSMg01no380_f20.b1 PHD_FILE: MSMg01no380_f20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:21:25 2005
         (164 letters)



>mm_chrX_139928177_139928742
          Length = 566

 Score =  294 bits (152), Expect = 2e-84
 Identities = 159/162 (98%), Gaps = 2/162 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccagaataccatgaaaaaaaaaaaa--cctaagaccacccactatgatgcacaca 62
           |||||||||||||| |||||||||||||||  ||||||||||||||||||||||||||||
Sbjct: 205 gaattccagaatacaatgaaaaaaaaaaaaaacctaagaccacccactatgatgcacaca 264

                                                                       
Query: 63  gataagaactacattaaaaagaaccaaacaacaaacaaacaaaaaaacaggaagcatttt 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gataagaactacattaaaaagaaccaaacaacaaacaaacaaaaaaacaggaagcatttt 324

                                                     
Query: 123 ctctatttcagcccatcccataaatgatgatcattcccaatg 164
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctctatttcagcccatcccataaatgatgatcattcccaatg 366


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 164
Length of database: 566
Length adjustment: 8
Effective length of query: 156
Effective length of database: 558
Effective search space:    87048
Effective search space used:    87048
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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