BAC Information

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BAC

Clone NameMSMg01-382A06
ChromosomeX (Build37)
Map Location 101,667,691 - 101,668,105
singlet/doubletsinglet
Overlap genenone
Upstream geneTsix, Xist, Rps12-ps1, LOC668406, LOC676246, ENSMUSG00000043661, LOC668412, LOC668415, B230206F22Rik, Cnbp2, LOC100042640, Slc16a2, EG621381, EG668426, LOC668430, Rnf12, C77370, Vcp-ps, EG621542
Downstream geneUprt, Zdhhc15, Magee2, LOC622098, LOC676331, 5530601H04Rik, 2610029G23Rik, Magee1, LOC622159, LOC668454, E530001F21Rik, LOC622202, LOC100043213
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-382A06.T7 (MSMg01no382_a06.b1)MSMg01-382A06.TJ (MSMg01no382_a06.g1)
ACCAG486019AG486020
length754758
length of high quality
(start - end)		612 (31 - 642)515 (58 - 572)
definitionCHROMAT_FILE: MSMg01no382_a06.b1 PHD_FILE: MSMg01no382_a06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:23:37 2005CHROMAT_FILE: MSMg01no382_a06.g1 PHD_FILE: MSMg01no382_a06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:23:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTATCTCTTAT
ATCGAAGAGCTACAGGCAATTAATGGCTGCTTACGAGAAGAAGAATCAGT
CTTCCCTGGGAATGAGCCCTGATAGGTTATGTAATCTCAAGCGATTAGCT
TCAAACACATGTCCATATAAGCAACATTAAAGAGAAGCACCAAGCTTTAC
TTATATATACAGACATACCCATGTGAGTGTGCATGCATATGTAACAATAA
TCATTAGAGAAGATATGAAGCTGAAAGGGACTACTGAGCACTCAGGAAGA
GTTGTAGAGGAGAAACTGTTGAATGGAAATGATGTAAATACAGCACTCAT
ATATAAAATTCTCAATGAAATAAATGTGAAAAATAAAGATTTCCATCATA
CAAATACAATTCTTCTAGCTTAATGTCTTAGTAAGGGTTACTATACTATT
GTTATGATAAAAACACAATGTGACCTAAAGCAACTTGAGGAGGAAAGACT
TTCATTAAAACTTCCATATTACAGTTCATCACTGAAATCAGATAGGACAA
GAACCTGGAGGCGGGAGCTGATGTGGAGACCACTGAGGAGTGATGCTTAC
TGTCTTGCTCTTCATGGCTTGCTCACCCTGCTTTCTTATAGAGCCCAAGA
CCAGCAGCTCAAGGGCAGCACTAGCCACAATGGGCTTGGGCCTCTTTCCC
CATCAATCACTAACTTTAAAAGGACCCTATAGGTGTGGATATGAACCATT
CTTA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXATTTGCAACTATGTTAGAGCTGTTTAGCCCTAAGAGCCCTCAC
AACGGAATAAGGTTATAATGAAGGGATTTGGGAGGAGATTACTAGATCTA
ATGACAACAGAGCCTAGAATATTGGCAGCAAACATGCAGGAGACAATGAA
TGAGTAAAATAGATTGAAAGAGCCTGCCAGGGTTCAAAACAAATATCAAA
CACTGACTAAAATATTCCTTTGGATCAGGTATTGGTGGGGGGAATAGGAT
TGAAACCCTGAGGGCCAGCAGAAAGAATGGAAACAGGCAACCTCAGAGGT
AGGAGGTTGGGAGGACCCTCCAGAATGCACCAGAGACCTGGGAGGTGAGA
GACTCTCAGGACTTAAAGAGAGGGACCTTAGATGAAATGCCCTACACTGG
GGAGAGGGAACTTGTAGAGCCCACCTCTAGTAGAAAGACAGGACATCAAG
TGGGGTATGGGGTTGCCATCCCACAGTCAAAAAACTCTGATCCAGAATTG
TTCCTGTCTAANAGAACTGCAGGGACAAATGTAGAAGAGACTGAGGGATA
GGAGGTCCAGTGACCAGCTCCAAATTGTGATCCATCTCAGGAGAAGGCTC
TAGGGCTGTCCCTATTACTGATGCTTTGGTGGGCTCCCAGACAAAACCCT
ACGATGGCTGGCGTCCGACAAACCCCCCAGGTATCCTGATTGAGACAGAA
TTTCAAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no382_a06.g1 MSMg01no382_a06.g1 CHROMAT_FILE:
MSMg01no382_a06.g1 PHD_FILE: MSMg01no382_a06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:23:37 2005
         (515 letters)



>mm_chrX_101667691_101668605
          Length = 915

 Score =  795 bits (411), Expect = 0.0
 Identities = 414/415 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atttgcaactatgttagagctgtttagccctaagagccctcacaacggaataaggttata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 atttgcaactatgttagagctgtttagccctaagagccctcacaacggaataaggttata 356

                                                                       
Query: 61  atgaagggatttgggaggagattactagatctaatgacaacagagcctagaatattggca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 atgaagggatttgggaggagattactagatctaatgacaacagagcctagaatattggca 296

                                                                       
Query: 121 gcaaacatgcaggagacaatgaatgagtaaaatagattgaaagagcctgccagggttcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 gcaaacatgcaggagacaatgaatgagtaaaatagattgaaagagcctgccagggttcaa 236

                                                                       
Query: 181 aacaaatatcaaacactgactaaaatattcctttggatcaggtattggtggggggaatag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 235 aacaaatatcaaacactgactaaaatattcctttggatcaggtattggtggggggaatag 176

                                                                       
Query: 241 gattgaaaccctgagggccagcagaaagaatggaaacaggcaacctcagaggtaggaggt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 gattgaaaccctgagggccagcagaaagaatggaaacaggcaacctcagaggtaggaggt 116

                                                                       
Query: 301 tgggaggaccctccagaatgcaccagagacctgggaggtgagagactctcaggacttaaa 360
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 115 tgggaggaccctccagaatgcaccagagacctgggaggtaagagactctcaggacttaaa 56

                                                                  
Query: 361 gagagggaccttagatgaaatgccctacactggggagagggaacttgtagagccc 415
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55  gagagggaccttagatgaaatgccctacactggggagagggaacttgtagagccc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 515
Length of database: 915
Length adjustment: 10
Effective length of query: 505
Effective length of database: 905
Effective search space:   457025
Effective search space used:   457025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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